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Report for CCDS39646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39646.1 Public Mus musculus 6 Tead4 23 108 98 CCDS HistoryNCBI Gene:21679Re-query CCDS DB by CCDS ID:39646.1Re-query CCDS DB by GeneID:21679See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 39646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006311.12 ENSMUSP00000006311.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006311.12Link to Ensembl Protein Viewer:ENSMUSP00000006311.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006311Re-query CCDS DB by Protein ID:ENSMUSP00000006311
Original member Current member NCBI NM_011567.2 NP_035697.3 Accepted alive Link to Nucleotide Sequence:NM_011567.2Link to Protein Sequence:NP_035697.3Re-query CCDS DB by Nucleotide ID:NM_011567Re-query CCDS DB by Protein ID:NP_035697Link to BLAST:NP_035697.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035697.3 427 Q62296-1 427 100% 0 0

Chromosomal Locations for CCDS 39646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128228366 128228479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128228568 128228720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128230592 128230732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128242401 128242574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128243370 128243509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128246321 128246376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128246818 128246861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128247960 128248088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128251540 128251602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128251922 128251986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128270868 128271072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol I (codon ATT) with M at amino acid position 1

Nucleotide Sequence (1284 nt):
ATTACCTCCAACGAGTGGAGCTCTCCCGACTCCCCCGAGGGGAGCAGCATCTCTGGGGGCAGCCAGGCAC
TGGACAAGCCCATCGACAATGATGCAGAGGGTGTATGGAGCCCCGAAATTGAGCGAAGCTTCCAGGAGGC
CCTGGCCATCTACCCACCCTGCGGCCGCCGCAAAATTATCCTGACGGAGGAAGGCAAGATGTATGGTCGG
AATGAGCTGATCGCACGCCATATCAAGCTCAGGACAGGGAAGACGCGCACAAGGAAGCAGGTCTCCAGCC
ACATCCAGGTGCTTGCCCGTCGAAAAGCCCGGGAGATCCAGGCCAAACTCAAGGACCAGGCAGCTAAGAA
CAAGGCCCTGCAGAGCATGGCTGCCATGTCGTCCGCACAGATCGTCTCGGCCACAGCCTTCCACAGTAAA
ATGGCTCTTGCCCGGGGCCCTGGCTACCCAGCAATCTCAGGGTTTTGGCAAGGAGCTTTGCCAGGCCAAC
CTGGAACATCCCACGATGTGAAACCTTTCTCTCAAAACACCTACCCTGTCCAGCCTCCGCTGCCTCTGCC
AGGCTTTGAGTCTCCTGCAGGGCCCACCCCCTCACCCTCCGCACCGCTCGCTCCTCCGTGGCAAGGCCGC
AGCATAGCTAGCTCCAAGCTCTGGATGTTGGAGTTCTCGGCTTTCCTGGAGCGCCAGCAAGATCCCGACA
CATACAACAAACACCTGTTTGTGCACATCAGCCAGTCAAGCCCAAGCTACAGTGACCCCTACCTCGAAAC
TGTGGACATCCGCCAAATCTATGACAAGTTCCCAGAGAAGAAGGGAGGCCTCAAGGAGCTATTTGAACGG
GGGCCCTCTAATGCCTTCTTCCTTGTGAAGTTCTGGGCAGACCTCAATACCAACATCGATGACGAGGGCA
GCGCCTTCTATGGGGTCTCCAGCCAGTACGAGAGCCCGGAGAACATGATTATCACCTGCTCTACGAAGGT
CTGCTCATTTGGCAAGCAAGTGGTGGAGAAAGTTGAGACGGAGTATGCCCGCTATGAGAATGGCCACTAT
TTGTACCGCATCCACCGGTCCCCTCTCTGTGAGTACATGATCAACTTTATCCACAAGCTGAAACACTTAC
CCGAGAAGTACATGATGAACAGTGTGCTGGAGAACTTCACCATCCTGCAGGTGGTCACCAACCGAGACAC
ACAGGAGACCTTGCTGTGTATTGCATATGTCTTCGAAGTTTCAGCCAGCGAGCATGGGGCTCAGCACCAC
ATCTACCGACTTGTGAAAGAATGA

Translation (427 aa):
MTSNEWSSPDSPEGSSISGGSQALDKPIDNDAEGVWSPEIERSFQEALAIYPPCGRRKIILTEEGKMYGR
NELIARHIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLKDQAAKNKALQSMAAMSSAQIVSATAFHSK
MALARGPGYPAISGFWQGALPGQPGTSHDVKPFSQNTYPVQPPLPLPGFESPAGPTPSPSAPLAPPWQGR
SIASSKLWMLEFSAFLERQQDPDTYNKHLFVHISQSSPSYSDPYLETVDIRQIYDKFPEKKGGLKELFER
GPSNAFFLVKFWADLNTNIDDEGSAFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHY
LYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHH
IYRLVKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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