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Report for CCDS39439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39439.1 Public Mus musculus 6 Cadps2 23 108 98 CCDS HistoryNCBI Gene:320405Re-query CCDS DB by CCDS ID:39439.1Re-query CCDS DB by GeneID:320405See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018122.13 ENSMUSP00000018122.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018122.13Link to Ensembl Protein Viewer:ENSMUSP00000018122.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018122Re-query CCDS DB by Protein ID:ENSMUSP00000018122
Original member NCBI NM_153163.4 NP_694803.3 Updated not alive Link to Nucleotide Sequence:NM_153163.4Link to Protein Sequence:NP_694803.3Re-query CCDS DB by Nucleotide ID:NM_153163Re-query CCDS DB by Protein ID:NP_694803
Current member NCBI NM_153163.5 NP_694803.3 Accepted alive Link to Nucleotide Sequence:NM_153163.5Link to Protein Sequence:NP_694803.3Re-query CCDS DB by Nucleotide ID:NM_153163Re-query CCDS DB by Protein ID:NP_694803Link to BLAST:NP_694803.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694803.3 1304 Q8BYR5-2 1304 100% 0 0

Chromosomal Locations for CCDS 39439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 23263543 23263716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23269246 23269350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23287664 23287771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23302294 23302326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23302431 23302514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23314133 23314207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23321706 23321853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23323280 23323435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23328783 23328902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23329020 23329161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23344207 23344363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23354194 23354202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23355824 23355927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23381057 23381077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23382881 23383004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23385467 23385530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23390385 23390486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23410742 23410929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23412948 23413084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23427164 23427364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23429110 23429218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23443972 23444038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23496758 23496897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23528052 23528163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23583342 23583463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23587377 23587613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23599430 23599510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23626493 23626825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23688847 23688960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23838790 23839137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3915 nt):
ATGCTCGACCCGTCTTCCAGCGAGGAGGAGTCGGACGAGGGGCTGGAGGAGGAGAGCCGCGAGGTGTTGG
TGGCGCCGGGCGTCTCCCAGCGAGCGCCGCCGGCCGCGGCTCGGGAAGGGCGGCGGGACGCGCCGGGACG
CTCCGGTGGTGGCAGCGGCGGCGGAGCGGCCAGACCCGTGAGCCCGAGCCCCTCGGTACTCAGCGAGGGG
CGAAATGAGCCCGAGCTGCAGCTGGACGAGGAGCAGGAGCGGCGCATCCGCCTGCAGCTCTACGTCTTCG
TGGTGAGGTGCATCGCGTACCCATTCAACGCCAAGCAGCCCACCGACATGGCCCGGAGGCAGCAGAAGCT
TAACAAACAACAATTGCAGTTACTGAAAGAACGGTTCCAGGCCTTTCTCAATGGAGAAACTCAGATAGTA
GCAGACGAAGCCTTCTGCAATGCCGTCCGGAGTTACTATGAGGTGTTTCTAAAGAGTGACCGTGTGGCCA
GAATGGTTCAAAGTGGAGGATGCTCTGCTAATGATTTCAGAGAGGTGTTTAAGAAGAACATAGAAAAACG
TGTCCGTAGCCTGCCAGAGATAGATGGCCTGAGCAAAGAGACAGTGCTGAGCTCATGGATAGCCAAATAT
GACGCCATTTACAGGGGAGAAGAAGATTTGTGCAAACAGCCGAACAGGATGACCCTCAGTGCCGTGTCTG
AGCTTATTCTGAGTAAGGAGCAGCTCTATGAAATGTTCCAGCAGATTCTGGGCATTAAGAAGCTGGAACA
CCAGCTACTTTATAACGCATGCCAGCTGGATAACGCTGATGAACAAGCAGCCCAGATCAGAAGGGAACTT
GATGGCCGCCTGCAGTTGGCAGAGAAGATGGCAAAGGAGAGAAGATTCCCCAGATTCATCTCGAAAGAAA
TGGAGAGTATGTACATTGAAGAGCTGCGAGCCTCCGTGAACCTGCTAATGGCCAATTTAGAAAGTCTTCC
AGTTTCAAAAGGTGGCCCGGAATTTAAATTACAAAAATTAAAGCGTTCGCAGAACTCTGCGTTTCTGGAC
CTGGGAGATGAGAACGAGATCCAGCTGTCCAAGTCGGATGTGGTGTTGTCGTTCACGTTAGAGATTGTCA
TCATGGAAGTGCAAGGACTGAAATCTGTGGCTCCCAATCGAATCGTTTACTGCACAATGGAGGTGGAAGG
AGGAGAAAAACTCCAGACAGACCAGGCTGAAGCATCAAGGCCACAATGGGGGACCCAAGGAGATTTCAAC
ACTACCCACCCTCGGCCTGTCGTCAAAGTGAAGCTCTTCACAGAAAGCACGGGGGTCCTGGCCCTGGAAG
ACAAGGAACTGGGCAGGGTGGTGTTATACCCAACTTCTAATAGCTCCAAGTCAGCAGAGTTACACCGAAT
GACAGTACCCAAGAACAGTCAGGACTCGGACCTAAAGATCAAATTGGCAGTGCGCATGGATAAACCAGCA
CACATGAAGCATAGTGGGTACCTGTATGCCCTTGGACAGAAGGTTTGGAAAAGATGGAAAAAGCGTTACT
TTGTTCTCGTTCAGGTTAGCCAGTACACCTTTGCTATGTGCAGCTATAGAGAAAAAAAGTCGGAACCACA
GGAATTAATGCAACTGGAAGGATACACAGTGGATTACACAGACCCTCACCCAGGCCTTCAGGGTGGTCAG
GTGTTCTTCAACGCTGTTAAAGAGGGAGATACTGTGATCTTTGCCAGTGATGATGAACAGGACAGAATAT
TATGGGTACAAGCCATGTACAGGGCTACAGGCCAGTCTTACAAACCAGTTCCTGCAGTCCAAAGCCAGAA
GCTGAATCCTAAAGGCGGAGCTCTCCATGCAGATGCTCAGCTTTATGCAGACCGTTTTCAGAAACACGGG
ATGGATGAGTTTATTTCTGCGAGTCCTTGCAAGCTTGACCATGCCTTCCTCTTCAGAATTCTCCAGAGAC
AGACTTTGGATCACAGACTGAATGATTCGTATTCTTGTTTGGGGTGGTTTAGCCCTGGCCAAGTCTTTGT
GTTAGATGAGTACTGTGCCCGCTACGGAGTGAGAGGCTGTCACAGGCATCTCTGCTACCTTACAGAACTG
ATGGAACATTCAGAAAACGGTGCTGTCATTGACCCCACCCTGCTCCATTACAGCTTTGCATTCTGTGCCT
CTCACGTGCACGGCAACAGGCCTGATGGGATTGGAACGGTTTCAGTGGAAGAGAAAGAAAGATTTGAGGA
GATAAAAGACCGACTTTCTTCGCTTTTAGAAAACCAGATCAGCCACTTCAGATACTGCTTTCCCTTCGGA
CGACCTGAGGGTGCCCTAAAAGCTACGCTCTCCTTACTTGAAAGGGTTTTAATGAAAGACATTGCCACTC
CTATCCCTGCGGAGGAGGTGAAGAAAGTGGTCAGAAAATGTCTGGAGAAAGCTGCCTTGATCAATTACAC
TAGGCTCACAGAATATGCCAAAATAGAAGGGCCCGCAGAAAAGGAAACAGAGACCATGAACCAGGCAACT
CCTGCCAGGAAGCTGGAAGAGGTTCTTCATCTTGCAGAGCTCTGCATAGAAGTCCTACAGCAAAATGAGG
AGCATCATGCTGAGGGAAGAGAGGCATTTGCCTGGTGGCCTGACTTGTTGGCCGAGCATGCAGAGAAGTT
TTGGGCTTTATTCACAGTAGACATGGATACTGCGCTGGAGGCCCAACCTCAAGACTCCTGGGATAGCTTT
CCCCTTTTCCAGCTGCTTAATAATTTCCTCAGAAATGACACACTTTTGTGTAATGGAAAATTCCACAAGC
ACTTGCAAGAAATCTTTGTGCCCTTGGTTGTCCGCTACGTTGACCTGATGGAGTCTGCCATCGCCCAGTC
CATTCACAGAGGTTTTGAGCAGGAGACATGGCAGCCTGTCAAGAATATCGCCAACAGTCTTCCCAATGTA
GCTCTTCCAAAAGTTCCAAGTCTGCCTCTTAATCTTCCACAGATTCCTAGCTTTTCTACTCCTCCGTGGA
TGGCTTCTTTATATGAGTCCACCAATGGCTCAACAACTTCCGAGGATCTGTTCTGGAAGCTCGATGCGCT
GCAAATGTTCGTCTTTGATCTCCATTGGCCAGAACAAGAGTTTGCCCACCACTTAGAGCAAAGACTTAAA
CTAATGGCCAGTGATATGATAGAGGCGTGTGTCAAAAGAACAAGAACTGCGTTCGAACTCAAGCTACAAA
AGGCAAACAAAACAACTGACTTGCGCATCCCAGCTTCCGTGTGCACAATGTTTAATGTATTAGTTGATGC
TAAAAAGCAAAGCACCAAGCTGTGTGCCCTGGATGGAGGACAAGAGCAACAGTACCATTCAAAAATAGAT
GATTTGATTGACAACACCGTGAAAGAAATCATTGCACTGCTGGTTTCAAAGTTTGTTTCAGTGTTGGAAG
GGGTGCTTTCGAAGTTGTCGAGGTATGACGAAGGCACTTTCTTCTCATCCATCCTGTCCTTCACTGTGAA
AGCAGCTGCAAAATATGTGGATGTCCCTAAACCAGGAATGGATCTGGCAGACACCTACATTATGTTTGTC
CGGCAAAACCAGGATATTCTTCGAGAAAAAGTCAATGAAGAGATGTACATAGAAAAGTTGTTTGATCAAT
GGTACAGCAATTCCATGAAAGTCATTTGTGTGTGGCTGGCTGACAGACTAGACCTCCAGCTTCATATTTA
CCAACTGAAGACGCTCATCAAGATTGTGAAGAAAACCTATAGGGATTTCCGATTGCAGGGTGTGTTGGAG
GGGACGCTGAACAGTAAGACATATGATACTCTGCACAGACGTCTAACTGTAGAGGAGGCCACAGCCTCTG
TCTCAGAAGGCGGAGGACTTCAGGGCATTACCATGAAGGACAGTGATGAGGAGGAAGAAGGCTGA

Translation (1304 aa):
MLDPSSSEEESDEGLEEESREVLVAPGVSQRAPPAAAREGRRDAPGRSGGGSGGGAARPVSPSPSVLSEG
RNEPELQLDEEQERRIRLQLYVFVVRCIAYPFNAKQPTDMARRQQKLNKQQLQLLKERFQAFLNGETQIV
ADEAFCNAVRSYYEVFLKSDRVARMVQSGGCSANDFREVFKKNIEKRVRSLPEIDGLSKETVLSSWIAKY
DAIYRGEEDLCKQPNRMTLSAVSELILSKEQLYEMFQQILGIKKLEHQLLYNACQLDNADEQAAQIRREL
DGRLQLAEKMAKERRFPRFISKEMESMYIEELRASVNLLMANLESLPVSKGGPEFKLQKLKRSQNSAFLD
LGDENEIQLSKSDVVLSFTLEIVIMEVQGLKSVAPNRIVYCTMEVEGGEKLQTDQAEASRPQWGTQGDFN
TTHPRPVVKVKLFTESTGVLALEDKELGRVVLYPTSNSSKSAELHRMTVPKNSQDSDLKIKLAVRMDKPA
HMKHSGYLYALGQKVWKRWKKRYFVLVQVSQYTFAMCSYREKKSEPQELMQLEGYTVDYTDPHPGLQGGQ
VFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSYKPVPAVQSQKLNPKGGALHADAQLYADRFQKHG
MDEFISASPCKLDHAFLFRILQRQTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYGVRGCHRHLCYLTEL
MEHSENGAVIDPTLLHYSFAFCASHVHGNRPDGIGTVSVEEKERFEEIKDRLSSLLENQISHFRYCFPFG
RPEGALKATLSLLERVLMKDIATPIPAEEVKKVVRKCLEKAALINYTRLTEYAKIEGPAEKETETMNQAT
PARKLEEVLHLAELCIEVLQQNEEHHAEGREAFAWWPDLLAEHAEKFWALFTVDMDTALEAQPQDSWDSF
PLFQLLNNFLRNDTLLCNGKFHKHLQEIFVPLVVRYVDLMESAIAQSIHRGFEQETWQPVKNIANSLPNV
ALPKVPSLPLNLPQIPSFSTPPWMASLYESTNGSTTSEDLFWKLDALQMFVFDLHWPEQEFAHHLEQRLK
LMASDMIEACVKRTRTAFELKLQKANKTTDLRIPASVCTMFNVLVDAKKQSTKLCALDGGQEQQYHSKID
DLIDNTVKEIIALLVSKFVSVLEGVLSKLSRYDEGTFFSSILSFTVKAAAKYVDVPKPGMDLADTYIMFV
RQNQDILREKVNEEMYIEKLFDQWYSNSMKVICVWLADRLDLQLHIYQLKTLIKIVKKTYRDFRLQGVLE
GTLNSKTYDTLHRRLTVEEATASVSEGGGLQGITMKDSDEEEEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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