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Report for CCDS39200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39200.1 Public Mus musculus 5 Dipk1a 23 108 98 CCDS HistoryNCBI Gene:67266Re-query CCDS DB by CCDS ID:39200.1Re-query CCDS DB by GeneID:67266See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031198.10 ENSMUSP00000031198.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031198.10Link to Ensembl Protein Viewer:ENSMUSP00000031198.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031198Re-query CCDS DB by Protein ID:ENSMUSP00000031198
Original member Current member NCBI NM_026062.4 NP_080338.1 Accepted alive Link to Nucleotide Sequence:NM_026062.4Link to Protein Sequence:NP_080338.1Re-query CCDS DB by Nucleotide ID:NM_026062Re-query CCDS DB by Protein ID:NP_080338Link to BLAST:NP_080338.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080338.1 428 Q9D6I7 428 100% 0 0

Chromosomal Locations for CCDS 39200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107909404 107910216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107911612 107911788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107914346 107914453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107924585 107924719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107986949 107987002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGGCGAGGAGTCTCTGCGCGGGGGCCTGGCTGAGGAAACCCCATTACCTCCAGGCTCGGTTGTCCTACA
TGCGGGTGAAGTATCTTTTCTTTTCCTGGCTGGTGGTTTTTGTCGGAAGCTGGATCATATATGTGCAGTA
TTCAACCTATACAGAGCTATGCAGAGGGAAGGACTGTAAGAAAATCATATGTGACAAATACAAGACCGGA
GTTATTGACGGACCTGCATGCAACAGCCTCTGTGTCACAGAAACACTGTACTTTGGAAAATGTCTGTCCA
ACAAGCCCAGCAACCAGATGTATTTAGGAGTTTGGGATAATCTACCAGGTGTTGTGAAGTGTCAAATGGA
ACAAGCTCTTCATCTTGATTTTGGAACTGAATTGGAGCCAAGAAAAGAAATAGTGCTATTTGATAAACCA
ACCAGGGGAACTACTGTACAGAAATTCAAAGAAATGGTGTACAGTCTCTTTAAGGCAAAATTAGGTGACC
AAGGGAACCTCTCTGAATTGGTTAATCTCATCTTGACAGTGGCTGACGGAGACAGAGATGGCCAGGTCTC
CCTAGGAGAAGCCAAGTCAGCATGGGCACTTCTTCAGTTGAATGAGTTTCTCCTGATGGTGATACTTCAA
GATAAAGAACACACCCCCAAACTAATGGGATTCTGTGGTGATCTCTACGTGATGGAAAGTGTTGAATATA
CCTCTCTGTATGGAATAAGTCTACCATGGGTTATGGAACTTTTTATTCCATCTGGGTTCAGAAGGAGCAT
GGATCAATTGTTCACACCATCATGGCCCAGAAAGGCAAAGATAGCCATAGGACTTCTAGAATTTGTAGAG
GATGTTTTCCATGGCCCCTATGGAAACTTTCTCATGTGTGACACCAGTGCCAAAAACCTAGGATATAATG
AGAAGTATGACTTGAAAATGGTGGATATGAGAAAAATTGTGCCAGAGACAAACCTAAAGGAACTTATTAA
GGACCGCCACTGTGAGTCTGACCTGGACTGTGTCTACGGTACAGACTGTAGAACTAGCTGTGACCTGAGT
ACAATGAAGTGCACTTCTGAAGTAATACAACCAAACTTGGCAAAAGCCTGTCAGTTACTCAAAGACTACC
TACTGCACGGTGCTCCCAGTGAAATTCGGGAAGAATTAGAAAAACAGCTTTATTCTTGTATTGCTCTCAA
AGTCACAGCAAATCAAATGGAAATGGAACATTCTTTGATATTAAATAACCTAAAAACGTTATTGTGGAAG
AAAATTTCCTACACAAATGACTCTTAG

Translation (428 aa):
MARSLCAGAWLRKPHYLQARLSYMRVKYLFFSWLVVFVGSWIIYVQYSTYTELCRGKDCKKIICDKYKTG
VIDGPACNSLCVTETLYFGKCLSNKPSNQMYLGVWDNLPGVVKCQMEQALHLDFGTELEPRKEIVLFDKP
TRGTTVQKFKEMVYSLFKAKLGDQGNLSELVNLILTVADGDRDGQVSLGEAKSAWALLQLNEFLLMVILQ
DKEHTPKLMGFCGDLYVMESVEYTSLYGISLPWVMELFIPSGFRRSMDQLFTPSWPRKAKIAIGLLEFVE
DVFHGPYGNFLMCDTSAKNLGYNEKYDLKMVDMRKIVPETNLKELIKDRHCESDLDCVYGTDCRTSCDLS
TMKCTSEVIQPNLAKACQLLKDYLLHGAPSEIREELEKQLYSCIALKVTANQMEMEHSLILNNLKTLLWK
KISYTNDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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