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Report for CCDS38674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38674.1 Public Mus musculus 3 Zzz3 23 108 98 CCDS HistoryNCBI Gene:108946Re-query CCDS DB by CCDS ID:38674.1Re-query CCDS DB by GeneID:108946See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106100.8 ENSMUSP00000101706.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106100.8Link to Ensembl Protein Viewer:ENSMUSP00000101706.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106100Re-query CCDS DB by Protein ID:ENSMUSP00000101706
Original member Current member EBI ENSMUST00000106101.1 ENSMUSP00000101707.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106101.1Link to Ensembl Protein Viewer:ENSMUSP00000101707.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106101Re-query CCDS DB by Protein ID:ENSMUSP00000101707
Original member Current member NCBI NM_001080755.2 NP_001074224.1 Accepted alive Link to Nucleotide Sequence:NM_001080755.2Link to Protein Sequence:NP_001074224.1Re-query CCDS DB by Nucleotide ID:NM_001080755Re-query CCDS DB by Protein ID:NP_001074224Link to BLAST:NP_001074224.1
Original member Current member NCBI NM_001355673.1 NP_001342602.1 Accepted alive Link to Nucleotide Sequence:NM_001355673.1Link to Protein Sequence:NP_001342602.1Re-query CCDS DB by Nucleotide ID:NM_001355673Re-query CCDS DB by Protein ID:NP_001342602Link to BLAST:NP_001342602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074224.1 910 Q6KAQ7-1 910 100% 0 0
NP_001342602.1 910 Q6KAQ7-1 910 100% 0 0

Chromosomal Locations for CCDS 38674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152427307 152428832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152446799 152446937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152448779 152448926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152449013 152449128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152449645 152449716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152450610 152450711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152451303 152451398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152451991 152452143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152455820 152455954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152457869 152457969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152458254 152458398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2733 nt):
ATGGTAGGGACTTGCCATAGTATGGCTGCTTCCCGATCTACTCGTGTTACAAGATCAACAGTGGGGTTAA
ACGGCTTGGATGAATCTTTTTGTGGTAGAACTTTAAGGAATCGTAGCATTGCTCACCCAGAAGAAATCTC
TTCTCATTCTCAAGTACGATCAAGATCACCAAAGAAGAGAGCAGAGCCTGTGCCAACTCAGAAAGGAACC
AATAATGGAAGAACCTCTGATGTGAGACAGCAGAGCGCTCGAGACTCATGGGTGAGCCCTAGGAAAAGAA
GACTTTCTTCTTCGGAAAAGGATGACCTGGAAAGGCAGGCCCTAGAGAGTTGTGAGAGGAGGCAGGCAGA
GCCAGCACCACCAGTCTTTAAGAACATTAAACGCTGTCTTAGAGCTGAAGCCACAAATAGTTCAGAAGAA
GATTCGCCTGTAAAACCAGACAAGGAGCCAGGAGAACACAGGAGGATAGTAGTGGACCATGATGCAGACT
TTCAAGGGGCTAAACGAGCTTGTCGATGTCTTATATTGGATGATTGTGAGAAAAGGGAAGTTAAAAAGGT
GAATGTCAGTGAGGAAGGGCCACTTAATGCTGCAGTAGTAGAAGAAATCACAGGCTATTTGACTGTCAAT
GGTGTTGATGACAGTGACTCAGCTGTTATAAACTGTGATGACTGTCAGCCTGACGGGAACACTAAACAAA
ATAACCCTGGTTCCTGTGTGCTGCAGGAAGAATCAGTAGCTGGAGATGGGGATTCGGAAACCCAGACCTC
AGTGTTCTGTGGTAGTAGGAAGGAGGACAGTTGTATAGACCATTTCGTGCCTTGCACAAAGTCTGATGTG
CAGGTCAAGTTGGAGGACCACAAACTAGTAACTGCCTGCCTACCTGTGGAACGACGAAATCAGCTGACTG
CCGAGTCAGCTTCAGGCCCTGTTTCTGAAATTCAGTCATCCTTAAGAGATTCTGAGGAAGAAGTAGATGT
GGTGGGAGATAGCAGTGCCTCCAAAGAGCAGTGTAATGAGAACAGCAGTAACCCCCTGGACACGGGTTCT
GAACGCATGCCAGTCTCTGGAGAGCCAGAGCTGTCCTCTATCCTAGACTGTGTTTCAGCTCAGATGACAT
CTTTATCAGAACCTCAGGAACATCGGTACACCCTGAGAACTTCACCTCGGAGGGCGGCCCTGGCCAGAAG
TAGTCCTACTAAAACCACATCTCCTTACAGAGAAAATGGACAGTTGGAGGAGACTAATCTCAGTCCCCAG
GAAACAAACACGACCGTTAGTGATCATGTGAGTGAGTCTCCCACAGATCCTGCCGAAGTTCCTCAAGATG
GAAAGGTTCTATGTTGTGACTCTGAAAACTATGGAAGTGAAGGACTAAGTAAGCCACCCTCAGAGGCCAG
AGTGAATATTGGACATTTGCCATCTGCCAAAGAGAGTGCCAGTCAGCACACTGCCGAGGAGGAAGATGAT
GACCCTGATGTTTATTACTTTGAATCAGATCATGTGGCACTGAAACACAACAAAGATTATCAGAGACTGC
TACAGACCATTGCTGTACTTGAGGCTCAGCGTTCCCAAGCAGTGCAAGACCTGGAAAGTTTAGGCAAACA
CCAGAGAGAAGCACTAAAAAATCCTATTGGATTTGTGGAGAAACTTCAGAAGAAGGCTGACATAGGGCTT
CCATACCCACAGAGAGTTGTTCAGTTACCTGAGATCATGTGGGACCAGTACACCAATAGCCTTGGGAACT
TTGAAAGAGAATTTAAACACCGCAAAAGACATACTAGGAGAGTTAAGTTAGTTTTTGATAAAGTAGGGTT
GCCCGCTAGACCAAAAAGTCCTTTAGATCCTAAGAAGGATGGAGAATCCCTTTCGTACTCCATGTTGCCT
TTGAGTGATGGTCCAGAAGGCTCCCATAACCGTCCTCAGATGATAAGAGGTCGCCTGTGTGACGACAGCA
AGCCCGAGACCTTCAACCAGCTGTGGACTGTTGAAGAACAGAAAAAACTCGAACAGCTACTCCTGAAATA
CCCTCCCGAAGAAGTAGAATCTCGGCGGTGGCAGAAGATTGCTGATGAACTGGGCAACCGGACAGCCAAA
CAGGTCGCCAGTCGTGTACAGAAGTACTTCATAAAGCTAACGAAAGCCGGCATACCAGTTCCAGGCAGAA
CACCTAACTTATATATATACTCCAGAAAGTCCTCAACAAGCAGGCGACAGCACCCCCTTAATAAGCACCT
CTTTAAACCTTCCACTTTCATGACTTCACATGAGCCACCGGTGTACATGGATGAAGATGATGACCGGTCC
TGTCTCCATAGCCACATGAGCACTGCTGCTGAGGAGGCCTCAGATGAAGAAAGCATTCCTATCATATATA
GGAGTTTACCTGAATATAAAGAACTATTACAGTTTAAAAAGTTAAAAAAGCAGAAACTTCAACAAATGCA
AGCAGAAAGTGGGTTTGTGCAGCACGTAGGCTTTAAGTGTGATAACTGTGGTGTGGAACCTATCCAAGGA
GTCCGGTGGCACTGCCAGGACTGCCCTCCAGAAATGTCTTTGGATTTCTGTGACTCTTGTTCAGACTGCC
CACATGAAACAGATATTCACAAGGAAGACCACCAGTTAGAACCTGTTTATAAGTCAGAGACGTTCTTAGA
CAGAGATTACTGTGTGTCCCAGGGCACCAGTTATAGTTATCTGGACCCCAACTACTTCCCAGCCAACAGA
TGA

Translation (910 aa):
MVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRAEPVPTQKGT
NNGRTSDVRQQSARDSWVSPRKRRLSSSEKDDLERQALESCERRQAEPAPPVFKNIKRCLRAEATNSSEE
DSPVKPDKEPGEHRRIVVDHDADFQGAKRACRCLILDDCEKREVKKVNVSEEGPLNAAVVEEITGYLTVN
GVDDSDSAVINCDDCQPDGNTKQNNPGSCVLQEESVAGDGDSETQTSVFCGSRKEDSCIDHFVPCTKSDV
QVKLEDHKLVTACLPVERRNQLTAESASGPVSEIQSSLRDSEEEVDVVGDSSASKEQCNENSSNPLDTGS
ERMPVSGEPELSSILDCVSAQMTSLSEPQEHRYTLRTSPRRAALARSSPTKTTSPYRENGQLEETNLSPQ
ETNTTVSDHVSESPTDPAEVPQDGKVLCCDSENYGSEGLSKPPSEARVNIGHLPSAKESASQHTAEEEDD
DPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGL
PYPQRVVQLPEIMWDQYTNSLGNFEREFKHRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGESLSYSMLP
LSDGPEGSHNRPQMIRGRLCDDSKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAK
QVASRVQKYFIKLTKAGIPVPGRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRS
CLHSHMSTAAEEASDEESIPIIYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQG
VRWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLDPNYFPANR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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