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Report for CCDS3844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3844.1 Public Homo sapiens 4 PDLIM3 24 110 108 CCDS HistoryNCBI Gene:27295Re-query CCDS DB by CCDS ID:3844.1Re-query CCDS DB by GeneID:27295See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3844.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284767.12 ENSP00000284767.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284767.12Link to Ensembl Protein Viewer:ENSP00000284767.8Re-query CCDS DB by Nucleotide ID:ENST00000284767Re-query CCDS DB by Protein ID:ENSP00000284767
Original member Current member NCBI NM_014476.6 NP_055291.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014476.6Link to Protein Sequence:NP_055291.2Re-query CCDS DB by Nucleotide ID:NM_014476Re-query CCDS DB by Protein ID:NP_055291Link to BLAST:NP_055291.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055291.2 364 Q53GG5-1 364 100% 0 0

Chromosomal Locations for CCDS 3844.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185502294 185502483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185504475 185504586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185506522 185506652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185508299 185508562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185514270 185514337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185523362 185523446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185525020 185525171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185535342 185535434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCCCCAGACGGTGATCCTCCCGGGCCCTGCGCCCTGGGGCTTCAGGCTCTCAGGGGGCATAGACTTCA
AC
CAGCCTTTGGTCATCACCAGGATTACACCAGGAAGCAAGGCGGCAGCTGCCAACCTGTGTCCTGGAGA
T
GTCATCCTGGCTATTGACGGCTTTGGGACAGAGTCCATGACTCATGCTGATGCGCAGGACAGGATTAAA
GCA
GCAGCTCACCAGCTGTGTCTCAAAATTGACAGGGGAGAAACTCACTTATGGTCTCCACAAGTATCTG
AA
GATGGGAAAGCCCATCCTTTCAAAATCAACTTAGAATCAGAACCACAGGACGGGAACTACTTTGAACA
C
AAGCATAATATTCGGCCCAAACCTTTCGTGATCCCGGGCCGAAGCAGTGGATGCAGCACTCCCTCCGGG
ATT
GACTGTGGCAGTGGACGCAGCACCCCTTCTTCTGTCAGTACTGTTAGTACCATTTGCCCAGGTGACT
TG
AAAGTTGCGGCTAAGCTGGCCCCTAACATTCCTTTGGAAATGGAACTTCCTGGTGTGAAGATTGTACA
T
GCTCAGTTTAATACACCTATGCAGTTGTACTCAGATGACAATATTATGGAAACACTCCAGGGTCAGGTT
TCA
ACAGCCCTAGGGGAAACACCTTTGATGAGCGAGCCCACAGCCTCGGTGCCCCCCGAGTCGGACGTGT
AC
CGGATGCTCCACGACAATCGGAATGAGCCCACACAGCCTCGCCAGTCGGGCTCCTTCAGAGTGCTCCA
G
GGAATGGTGGACGATGGCTCTGATGACCGTCCGGCTGGAACGCGGAGTGTGAGAGCTCCGGTGACGAAA
GTC
CATGGCGGTTCAGGCGGGGCACAGAGGATGCCGCTCTGTGACAAATGTGGGAGTGGCATAGTCGGTG
CT
GTGGTGAAGGCGCGGGATAAGTACCGGCACCCTGAGTGCTTCGTGTGTGCCGACTGCAACCTCAACCT
C
AAGCAAAAGGGCTACTTCTTCATAGAAGGGGAGCTGTACTGCGAAACCCACGCAAGAGCCCGCACAAAG
CCC
CCAGAGGGCTATGACACGGTCACTCTGTATCCCAAAGCTTAA


Translation (364 aa):
MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK
A
AAHQLCLKID
RGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHNIRPKPFVIPGRSSGCSTPSG
I
DCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQV
S
TALGETPLM
SEPTASVPPESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTK
V
HGGSGGAQRMPLCDKCGSGI
VGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTK
P
PEGYDTVTLYPKA




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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