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Report for CCDS3822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3822.1 Public Homo sapiens 4 GLRA3 24 110 108 CCDS HistoryNCBI Gene:8001Re-query CCDS DB by CCDS ID:3822.1Re-query CCDS DB by GeneID:8001See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3822.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274093.8 ENSP00000274093.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274093.8Link to Ensembl Protein Viewer:ENSP00000274093.3Re-query CCDS DB by Nucleotide ID:ENST00000274093Re-query CCDS DB by Protein ID:ENSP00000274093
Original member Current member NCBI NM_006529.4 NP_006520.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006529.4Link to Protein Sequence:NP_006520.2Re-query CCDS DB by Nucleotide ID:NM_006529Re-query CCDS DB by Protein ID:NP_006520Link to BLAST:NP_006520.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006520.2 464 O75311-1 464 100% 0 0

Chromosomal Locations for CCDS 3822.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 174643786 174644064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174656743 174656787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174659054 174659197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174677078 174677292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174682802 174682939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174715488 174715570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174728475 174728698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174766963 174767030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174788816 174788943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174828741 174828811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGCCCACGTGAGACACTTTCGGACATTAGTTTCGGGATTTTACTTCTGGGAAGCAGCACTGTTACTCA
GTTTGGTTGCCACAAAGGAAACAGACAGTGCAAGATCTCGAAGTGCTCCAATGTCACCTTCTGATTTTCT
GGATAAATTAATGGGCAGGACATCAGGATATGATGCAAGAATCAGACCCAATTTTAAAGGCCCTCCAGTT
AATGTCACATGCAACATATTCATCAACAGCTTTGGCTCTATCGCAGAGACGACCATGGATTACAGAGTGA
ATATCTTTCTTCGTCAGAAATGGAATGATCCCCGCCTCGCGTACAGTGAATATCCTGACGACTCTTTAGA
CCTCGACCCCTCCATGTTGGACTCCATTTGGAAACCTGATTTGTTCTTTGCCAATGAAAAGGGTGCCAAC
TTTCATGAAGTCACTACAGACAACAAATTGCTAAGAATTTTCAAAAATGGAAATGTTCTTTATTCAATAA
GATTAACATTAACACTTTCCTGTCCAATGGATCTCAAGAATTTTCCCATGGATGTACAAACATGTATAAT
GCAACTGGAAAGCTTTGGGTACACAATGAATGATCTCATTTTTGAATGGCAAGATGAGGCACCCGTACAA
GTGGCAGAAGGACTCACTTTGCCCCAGTTTCTGTTGAAAGAAGAAAAAGATTTACGATACTGCACTAAAC
ATTACAATACAGGAAAGTTTACGTGTATAGAAGTGCGATTCCATCTGGAGCGACAAATGGGATACTATCT
GATCCAGATGTACATTCCCAGTCTCCTGATTGTTATTCTATCCTGGGTTTCATTCTGGATCAACATGGAT
GCAGCACCGGCCAGGGTAGCTCTGGGGATAACCACTGTGCTAACGATGACTACACAGAGTTCAGGATCAC
GAGCTTCCTTGCCAAAAGTTTCATATGTCAAAGCTATTGATATTTGGATGGCAGTATGCCTCCTTTTTGT
GTTTTCAGCACTTCTGGAGTATGCAGCTGTAAATTTTGTATCAAGACAACACAAAGAACTTCTGAGATTT
CGACGAAAGAGAAAGAATAAGACAGAAGCTTTTGCACTGGAGAAGTTTTACCGTTTCTCAGATATGGATG
ATGAGGTAAGGGAAAGCCGATTCAGCTTCACAGCCTATGGAATGGGACCATGTCTACAAGCAAAGGATGG
CATGACTCCAAAGGGCCCCAACCACCCTGTCCAGGTAATGCCAAAAAGTCCTGATGAAATGAGGAAGGTC
TTTATCGACCGGGCCAAGAAGATTGATACCATCTCCCGAGCCTGCTTCCCATTAGCTTTTTTGATTTTTA
ATATTTTCTACTGGGTTATCTATAAAATTCTTAGGCATGAGGATATTCATCAGCAGCAAGATTAA

Translation (464 aa):
MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDARIRPNFKGPPV
NVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGAN
FHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQ
VAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMD
AAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRF
RRKRKNKTEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKV
FIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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