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Report for CCDS36474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36474.1 Public Mus musculus 12 Trmt5 23 108 98 CCDS HistoryNCBI Gene:76357Re-query CCDS DB by CCDS ID:36474.1Re-query CCDS DB by GeneID:76357See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116420.3 ENSMUSP00000112121.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116420.3Link to Ensembl Protein Viewer:ENSMUSP00000112121.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116420Re-query CCDS DB by Protein ID:ENSMUSP00000112121
Original member NCBI NM_029580.3 NP_083856.1 Updated not alive Link to Nucleotide Sequence:NM_029580.3Link to Protein Sequence:NP_083856.1Re-query CCDS DB by Nucleotide ID:NM_029580Re-query CCDS DB by Protein ID:NP_083856
Current member NCBI NM_029580.4 NP_083856.1 Accepted alive Link to Nucleotide Sequence:NM_029580.4Link to Protein Sequence:NP_083856.1Re-query CCDS DB by Nucleotide ID:NM_029580Re-query CCDS DB by Protein ID:NP_083856Link to BLAST:NP_083856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083856.1 501 Q9D0C4-1 501 100% 0 0

Chromosomal Locations for CCDS 36474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 73280550 73280632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73281005 73281656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73282612 73282736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73284635 73285275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73286684 73286688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGAGAATCGTATGGAAGCTATTTGGATTCTCAAGAAGACTTTTGCAAGTGGAATGGTGTCACCCCAGTG
AATCAATATTGTTGTTTACCCTGGTGCCGAGACTTAGGAAAGCGCCTTCTGTTTTCTTGTTGGGTCAAAG
ACAAGGACTCTCAACCATGCCAGAAATAGAAGCAAGTGTGAGAGATAGTGAATTATTTTCACCACCCTCT
GACGTTCGAGGAATGAGAGAACTTGATAGAACAGCTTTTAAGAAGACAGTGTCCATCCCTGTGCTTAAAG
CGAGGAAAGAAGTAGTCAACAGATTGATGCGAGCCCTCAGGAGAGTAGCCCTGCAGCGCCCGGGCATAAA
GCGAGTGATTGAGGATCCCAAGGATGAAGACAGTAGGCTGATCATGTTGGACCCCTACAGGATGCTTACT
GCTGATTCCTTTGACAAAGCAGAACTCGGAGTTTTAAAAGAACTTGATGTCAGCCCACAGTTATCCCAGT
ACAACTTGGAACTAACATATGAAAATTTTAAGTCAGAAGAAATTTTGAAAGCTGTGCTTCCTGAAGGTCA
AGATGTAACCTCTGGATTCAGCAGGGTTGGGCATATTGCACACCTGAATCTCCGAGATCACCAGCTGCCC
TTCAAGCATTTAATTGGCCAAGTTATGGTTGACAAAAACCCAGGAATCACCTCAGCAGTAAATAAAACCA
GCAACATTGACAATACGTACCGAAATTTCCAAATGGAAGTGCTGTGTGGAGAGGAAAATATGCTGACCAA
GGTTCGAGAAAACAACTACACGTATGAGTTTGATTTCTCTAAAGTCTACTGGAATCCTCGTCTCTCTACT
GAACATGGCCGGATCACTGAACTTCTCAACCCTGGAGATGTCTTGTTTGATGTTTTTGCTGGGGTTGGGC
CCTTTGCCATTCCAGCAGCAAGGAAAAACTGCACAGTGTTTGCCAATGATCTCAATCCTGAGTCCCATAA
ATGGCTGTTGCACAATTGTAAACTGAATAAAGTTGACCAGAAAGTGAAAGTCTTTAACATGGATGGAAAA
GACTTCATCCAAGGGCCAGTCAGAGAAGAGTTAATGCTTCGGCTAGGATTGTCAGCTGAAGCTAAACCCT
CTGTCCACATTGTCATGAACTTGCCAGCTAAGGCCATAGAGTTTCTCAGTGTTTTCAGATCACTTTTGGA
TGGGCAGCCTTGCAGCACGGAGCTCCTCCCCACAGTGCACTGTTACTGCTTCTCCAAAGATAGCGATCCT
GCTAAGGATGTTCGTCAGCAGGCGGAAGCTGTGCTGGGCGTTTCCTTGGAGACCAGTAGTTCAGTTCATC
TCGTAAGGAATGTGGCCCCTAACAAGGAGATGCTGTGCATCACCTTCCAGATTCCCACTGCTACACTCTA
CAGGAACCAAAGCCTCAGTCTACAGAATGACCAAGAACCACCTCTTAAACGGCAGAAGACAGGTGACCCG
TTCTCAGGAGAACCACAGATCGCATCAGATTCTTAG

Translation (501 aa):
MRIVWKLFGFSRRLLQVEWCHPSESILLFTLVPRLRKAPSVFLLGQRQGLSTMPEIEASVRDSELFSPPS
DVRGMRELDRTAFKKTVSIPVLKARKEVVNRLMRALRRVALQRPGIKRVIEDPKDEDSRLIMLDPYRMLT
ADSFDKAELGVLKELDVSPQLSQYNLELTYENFKSEEILKAVLPEGQDVTSGFSRVGHIAHLNLRDHQLP
FKHLIGQVMVDKNPGITSAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTYEFDFSKVYWNPRLST
EHGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNMDGK
DFIQGPVREELMLRLGLSAEAKPSVHIVMNLPAKAIEFLSVFRSLLDGQPCSTELLPTVHCYCFSKDSDP
AKDVRQQAEAVLGVSLETSSSVHLVRNVAPNKEMLCITFQIPTATLYRNQSLSLQNDQEPPLKRQKTGDP
FSGEPQIASDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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