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Report for CCDS35736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35736.1 Public Mus musculus 1 Edem3 23 108 98 CCDS HistoryNCBI Gene:66967Re-query CCDS DB by CCDS ID:35736.1Re-query CCDS DB by GeneID:66967See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059498.11 ENSMUSP00000058941.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059498.11Link to Ensembl Protein Viewer:ENSMUSP00000058941.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059498Re-query CCDS DB by Protein ID:ENSMUSP00000058941
Original member Current member NCBI NM_001039644.2 NP_001034733.2 Accepted alive Link to Nucleotide Sequence:NM_001039644.2Link to Protein Sequence:NP_001034733.2Re-query CCDS DB by Nucleotide ID:NM_001039644Re-query CCDS DB by Protein ID:NP_001034733Link to BLAST:NP_001034733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034733.2 931 Q2HXL6 931 100% 0 0

Chromosomal Locations for CCDS 35736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151755567 151755727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151759738 151759783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151770832 151770932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151771410 151771449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151775857 151775969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151777406 151777559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151782373 151782507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151784739 151784844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151792328 151792425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151794676 151794801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151794980 151795063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151796066 151796149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151796783 151796907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151804278 151804443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151804665 151804819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151805850 151806003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151807366 151807557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151808204 151808369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151811519 151811704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151818310 151818713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGAGCAAAGCCGGCGGCTGCCGGGGCTGTGGGTGCCGGGTCCCCCAGCGAGCGTCATGGAGCCTGGTGG
CA
GCGACGGCCGCGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAG
G
GAAGAGAAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTTTGATCATGCTTATGGCAACTATATGGAA
CAT
GCCTACCCAGCTGATGAGCTCATGCCTTTAACCTGCCGGGGCCGTGTCAGAGGCCAGGAGCCCAGCC
GG
GGCGATGTGGATGACGCCTTGGGAAAGTTTTCCCTAACACTGATTGATTCTTTGGACACTCTTGTGGT
A
TTAAACAAAACTAAGGAATTTGAAGATGCTGTGAGAAAAGTTTTAAGGGATGTTAATTTAGATAATGAT
GTA
GTTGTTTCAGTCTTCGAAACAAACATCAGAGTTCTTGGGGGTCTTTTGGGCGGACACTCGCTGGCCA
TC
ATGCTGAAGGAGAAAGGCGAGCACATGCAGTGGTACAATGACGAGCTCCTCCACATGGCAAAGCAGCT
G
GGTTACAAGCTCCTGCCAGCTTTCAACACCACCAGCGGCCTTCCGTACCCCAGGATTAATTTAAAGTTT
GGC
ATCAGAAAACCAGAAGCCAGGACGGGAACAGAGACAGACACCTGTACAGCCTGTGCAGGCACCTTGA
TC
CTCGAGTTTGCTGCACTGAGTCGATTCACAGGAGCGACCATATTTGAGGAATATGCAAGAAAAGCTCT
T
GATTTTCTCTGGGAGAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGACTATCAATATTCATACTGGA
GAC
TGGGTACGCAAAGATAGTGGAGTTGGAGCGGGGATCGACTCCTATTATGAGTATCTGTTGAAAGCCT
AT
GTCTTGCTTGGAGATGACAGTTTTCTGGAAAGATTTAATACACATTACGATGCCATAATGAGGTATAT
A
AGCCAGCCACCTCTCCTACTTGATGTGCATATCCACAAACCAATGCTGAACGCTCGGACCTGGATGGAT
GCA
TTGCTTGCCTTTTTTCCAGGTTTGCAGGTTTTAAAGGGTGATATTAGACCTGCTATTGAAACTCACG
AA
ATGTTATACCAGGTGATTAAAAAACACAATTTTCTACCAGAGGCATTTACTACAGATTTCAGGGTCCA
T
TGGGCTCAGCATCCTTTAAGGCCAGAGTTTGCAGAAAGTACCTACTTCTTATATAAGGCTACAGGAGAC
CCT
TACTACCTTGAAGTAGGGAAAACACTTATTGAAAATTTGAATAAGTATGCTCGAGTGCCTTGCGGGT
TT
GCTGCCATGAAGGATGTTCGCACTGGGAGTCATGAGGACAGAATGGATTCATTCTTCTTGGCTGAAAT
G
TTTAAATACCTGTACCTGTTATTTGCTGATAAAGAGGACATCATTTTTGACATAGAAGACTATATCTTT
ACA
ACAGAAGCTCATCTGTTACCGCTTTGGCTTTCCACCACAAACCGAAGCATCTCAAAGAAGAACACAA
CC
TCAGAATACACAGAACTGGATGATAGTAATTTTGATTGGACTTGTCCAAACACTCAGATTCTTTTTCC
T
AATGATCCATTGTATGCTCAGAGCATCCGTGAACCCTTGAAAAACGTGGTGGATAAGAGCTGTCCGAGA
GGC
ATCATCAGAGTAGAGGAGAGTTTCAGAAGTGGAGCTAAGCCTCCTCTGAGAGCCAGAGATTTTATGG
CC
ACTAACCCTGAACATTTAGAAATCCTGAAGAAGATGGGGGTGAGTTTGATTCACCTCAAAGATGGGCG
A
GTCCAGCTGGTCCAACATGCAATCCAAGCTGCTAGTTCAATTGATGCTGAAGATGGGTTACGGTTCATG
CAG
GAGATGATAGAGCTGTCCAGTCAGCAACAGAAGGAGCAGCAGCTGCCTCCACGAGCTGTCCAGATTA
TC
TCCCACCCGTTTTTTGGCAGGGTCGTCTTAACTGCTGGACCAGCTCAGTTTGGGCTGGATCTATCTAA
A
CACAAAGAGACACGAGGATTTGTTGCAAGCAGTAAACCATATAATGGTTGTTCAGAGCTCACTAACCCT
GAG
GCAGTGATGGGAAAAATTGCCTTGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGGCACGCAACA
TT
CAGAATGCTGGCGCCATCGGTGGCATTGTGATCGATGACAACGAGGGGAGCAGTAGCGACACGGCCCC
C
CTGTTCCAGATGGCCGGCGATGGGAAGGACACAGACGACATCAAGATCCCCATGCTGTTCCTGTTCAGC
AAG
GAAGGCAGCATCATCCTGGACGCCATCCGCGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAG
CG
AGAGACCGAGATCCCGAAATGGAAAATGAAGACCAGCCATCTTCTGAAAATGATTCTCAGAATCAGAG
C
GCAGAGCAGATGCTCTCGCTTTCTCAGACAGTCGACTTGGCTGATAAGGAGAGCCCTGAACACCCTGCA
GAT
TCTCACTCAGAGGCGTCTCCATCGGACAGTGAAGAGGCTGCTGGCTTTGCCCCCTCTGAACAGATAT
CT
GGGTCCACCGAAAACCACGAGACTACAAGCCTTGATGGTGAATGTACAGACTTAGATAACCAAGTTCA
A
GAACAATCAGAAACTGAGGAAGATTCCAGTCCTAATGTCAGCTGGGGTACAAAGGCCCAGCCTATAGAC
TCC
ATATTAGCAGACTGGAATGAAGACATAGAAGCATTTGAAATGATGGAGAAGGATGAACTATGA


Translation (931 aa):
MSKAGGCRGCGCRVPQRASWSLVAATAALCLVLATSVCTAGAAPMSREEKQKLGNQVLEMFDHAYGNYME
H
AYPADELMPLTCRGRVRGQEPSRGDVDDALG
KFSLTLIDSLDTLVVLNKTKEFEDAVRKVLRDVNLDND
V
VVSVFETNIRVL
GGLLGGHSLAIMLKEKGEHMQWYNDELLHMAKQLGYKLLPAFNTTSGLPYPRINLKF
G
IRKPEARTGTETDTCTACAGTLILEFAALSRFTGATIFE
EYARKALDFLWEKRQRSSNLVGVTINIHTG
D
WVRK
DSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHYDAIMRYISQPPLLLDVHIHKPMLNARTWMD
A
LLAFFPGLQ
VLKGDIRPAIETHEMLYQVIKKHNFLPEAFTTDFRVHWAQHPLRPEFAESTYFLYKATGD
P
YYLEVGKTLIENLNKYARVPCGFAAMKDVRTGSHED
RMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIF
T
TEAHLLPLWLSTTNRSISKKNT
TSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPLKNVVDKSCPR
G
IIR
VEESFRSGAKPPLRARDFMATNPEHLEILKKMGVSLIHLKDGRVQLVQHAIQAASSIDAEDGLRFM
Q
EMIELSSQQQKEQQLPPRAVQIISHPFFGRVVLTAGPAQFGLDLSKHKE
TRGFVASSKPYNGCSELTNP
E
AVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVI
DDNEGSSSDTAPLFQMAGDGKDTDDIKIPMLFLFS
K
EGSIILDAIREHEQVEVLLSDKARDR
DPEMENEDQPSSENDSQNQSAEQMLSLSQTVDLADKESPEHPA
D
SHSEASPSDSEEAAGFAPSEQISGSTENHETTSLDGECTDLDNQVQEQSETEEDSSPNVSWGTKAQPID
S
ILADWNEDIEAFEMMEKDEL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser