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Report for CCDS3560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3560.1 Public Homo sapiens 4 CXCL6 24 110 108 CCDS HistoryNCBI Gene:6372Re-query CCDS DB by CCDS ID:3560.1Re-query CCDS DB by GeneID:6372See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3560.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000226317.10 ENSP00000226317.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000226317.10Link to Ensembl Protein Viewer:ENSP00000226317.5Re-query CCDS DB by Nucleotide ID:ENST00000226317Re-query CCDS DB by Protein ID:ENSP00000226317
Original member Current member NCBI NM_002993.4 NP_002984.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002993.4Link to Protein Sequence:NP_002984.1Re-query CCDS DB by Nucleotide ID:NM_002993Re-query CCDS DB by Protein ID:NP_002984Link to BLAST:NP_002984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002984.1 114 P80162 114 100% 0 0

Chromosomal Locations for CCDS 3560.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 73836751 73836859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73836964 73837096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73837203 73837286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73837623 73837641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGAGCCTCCCGTCCAGCCGCGCGGCCCGTGTCCCGGGTCCTTCGGGCTCCTTGTGCGCGCTGCTCGCGC
TG
CTGCTCCTGCTGACGCCGCCGGGGCCCCTCGCCAGCGCTGGTCCTGTCTCTGCTGTGCTGACAGAGCT
G
CGTTGCACTTGTTTACGCGTTACGCTGAGAGTAAACCCCAAAACGATTGGTAAACTGCAGGTGTTCCCC
GCA
GGCCCGCAGTGCTCCAAGGTGGAAGTGGTAGCCTCCCTGAAGAACGGGAAGCAAGTTTGTCTGGACC
CG
GAAGCCCCTTTTCTAAAGAAAGTCATCCAGAAAATTTTGGACAGTGGAAACAAGAAAAACTGA


Translation (114 aa):
MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFP
A
GPQCSKVEV
VASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser