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Report for CCDS35587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35587.1 Public Mus musculus 1 Nop58 23 108 98 CCDS HistoryNCBI Gene:55989Re-query CCDS DB by CCDS ID:35587.1Re-query CCDS DB by GeneID:55989See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35587.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191142.6 ENSMUSP00000140250.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191142.6Link to Ensembl Protein Viewer:ENSMUSP00000140250.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191142Re-query CCDS DB by Protein ID:ENSMUSP00000140250
Original member NCBI NM_018868.2 NP_061356.2 Updated not alive Link to Nucleotide Sequence:NM_018868.2Link to Protein Sequence:NP_061356.2Re-query CCDS DB by Nucleotide ID:NM_018868Re-query CCDS DB by Protein ID:NP_061356
Current member NCBI NM_018868.3 NP_061356.2 Accepted alive Link to Nucleotide Sequence:NM_018868.3Link to Protein Sequence:NP_061356.2Re-query CCDS DB by Nucleotide ID:NM_018868Re-query CCDS DB by Protein ID:NP_061356Link to BLAST:NP_061356.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061356.2 536 Q6DFW4 536 100% 0 0

Chromosomal Locations for CCDS 35587.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59685182 59685226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59690486 59690562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59692337 59692389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59695978 59696099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59698323 59698459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59700885 59700949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59702813 59702947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59704063 59704208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59704624 59704750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59705593 59705756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59706633 59706767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59707003 59707064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59709003 59709136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59710495 59710652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59711271 59711321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGTTGGTCCTGTTTGAAACGTCCGTTGGCTACGCCATCTTTAAGGTTCTGAATGAGAAGAAACTTCAAG
AG
GTTGATAGTTTGTGGAAAGAATTTGAAACTCCAGAGAAAGCAAATAAAATAGTAAAGCTAAAACATTT
T
GAGAAATTTCAGGATACAGCAGAAGCATTAGCAGCATTCACAGCTCTGATGGAAGGCAAAATCAATAAA
CAG
CTGAAGAAAGTTTTGAAGAAAATAGTAAAAGAAGCCCATGAACCTCTGGCTGTCGCTGATGCTAAAC
TA
GGAGGGGTAATAAAGGAAAAATTGAATCTCAGCTGTATCCATAGTCCTGTTGTTAATGAACTTATGAG
A
GGAATCCGATCACAAATGGATGGCTTGATTCCTGGGGTAGAACCACGTGAGATGGCAGCCATGTGTCTT
GGA
TTGGCCCACAGCCTGTCTCGATACAGATTGAAATTCAGTGCTGATAAAGTGGACACAATGATTGTTC
AG
GCAATTTCCTTATTAGATGACTTGGATAAAGAACTAAACAACTACATTATGCGGTGTAGGGAATGGTA
T
GGCTGGCATTTCCCTGAGTTAGGGAAAATTATTTCAGATAATCTGACATACTGCAAGTGTTTACAGAAA
GTT
GGGGACAGGAAGAACTATGCATCTGCCTCTCTCTCTGAATTCCTGTCTGAGGAAGTAGAAGCAGAAG
TG
AAAGCAGCTGCAGAGATATCTATGGGAACAGAGGTTTCTGAAGAAGATATTTGCAACATTCTACATCT
G
TGTACGCAGGTAATTGAAATTTCTGAATATAGGACTCAGCTCTATGAATATCTGCAAAATCGAATGATG
GCC
ATTGCACCTAACGTTACAGTCATGGTTGGAGAATTAGTTGGAGCACGGCTTATTGCTCATGCAGGTT
CT
CTTTTGAATTTGGCCAAGCATGCAGCTTCTACAGTTCAGATTCTTGGAGCAGAAAAAGCACTTTTCAG
G
GCCCTCAAATCTAGACGAGACACACCTAAATATGGACTTATTTATCATGCTTCTCTTGTAGGCCAGTCA
AGT
CCCAAACACAAAGGAAAGATTTCTCGAATGCTGGCAGCCAAAACTGTTCTGGCTATCAGATACGACG
CT
TTTGGTGAAGATTCCAGTTCTGCAATGGGAATTGAGAACAGAGCCAAATTAGAGGCCAGGTTGAGGAT
T
TTGGAGGACAGAGGGATAAGAAAAATAAGTGGAACAGGAAAGGCATTAGCAAAAGCAGAAAAGTATGAA
CAC
AAAAGTGAAGTGAAGACTTACGATCCCTCTGGTGACTCCACACTTCCAACTTGTTCTAAAAAACGCA
AA
ATAGAAGAGGTAGATAAAGAGGATGAAATTACTGAAAAGAAAGCAAAAAAAGCCAAGATTAAAATTAA
A
GCTGAAGTAGAGGAGGAGATGGAGGAGGAGGAGGCGGAGGAAGAACAGGTAGTAGAAGAGGAGCCGACT
GTA
AAGAAGAAAAAGAAGAAGGATAAAAAGAAACACATAAAGGAAGAGCCACTTTCCGAGGAGGAGCCAT
GT
ACCAGCACAGCAGTTCCTAGTCCAGAGAAAAAGAAGAAAAAGAAAAAGAAGAAAGATGCTGAAGACTA
A


Translation (536 aa):
MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAFTALMEGKINK
Q
LKKVLKKIVKEAHEPLAVADAKLGGVIK
EKLNLSCIHSPVVNELMRGIRSQMDGLIPGVEPREMAAMCL
G
LAH
SLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQK
V
GDRKNYASASLSEFLSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMM
A
IAPNVTVMVGELVGARLIAHA
GSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQS
S
PKHKGK
ISRMLAAKTVLAIRYDAFGEDSSSAMGIENRAKLEARLRILEDRGIRKISGTGKALAKAEKYE
H
K
SEVKTYDPSGDSTLPTCSKKRKIEEVDKEDEITEKKAKKAKIKIKAEVEEEMEEEEAEEEQVVEEEPT
V
KKKKKKDKKKHIKEEPLSEEEPCTSTAVP
SPEKKKKKKKKKDAED



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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