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Report for CCDS3534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3534.1 Public Homo sapiens 4 HTN1 24 110 108 CCDS HistoryNCBI Gene:3346Re-query CCDS DB by CCDS ID:3534.1Re-query CCDS DB by GeneID:3346See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246896.8 ENSP00000246896.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246896.8Link to Ensembl Protein Viewer:ENSP00000246896.3Re-query CCDS DB by Nucleotide ID:ENST00000246896Re-query CCDS DB by Protein ID:ENSP00000246896
Original member Current member EBI ENST00000511674.5 ENSP00000424501.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511674.5Link to Ensembl Protein Viewer:ENSP00000424501.1Re-query CCDS DB by Nucleotide ID:ENST00000511674Re-query CCDS DB by Protein ID:ENSP00000424501
Original member Current member NCBI NM_002159.4 NP_002150.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002159.4Link to Protein Sequence:NP_002150.1Re-query CCDS DB by Nucleotide ID:NM_002159Re-query CCDS DB by Protein ID:NP_002150Link to BLAST:NP_002150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002150.1 57 P15515 57 100% 0 0

Chromosomal Locations for CCDS 3534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70053077 70053127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70054322 70054342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70054421 70054450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70055498 70055569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (174 nt):
ATGAAGTTTTTTGTCTTTGCTTTAGTCTTGGCTCTCATGATTTCCATGATTAGCGCTGATTCACATGAAA
AG
AGACATCATGGGTATAGAAGAAAATTCCATGAAAAGCATCATTCACATCGAGAATTTCCATTTTATGG
G
GACTATGGATCAAATTATCTATATGACAATTGA


Translation (57 aa):
MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser