NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3502.1 Public Homo sapiens 4 EXOC1 24 110 108 CCDS HistoryNCBI Gene:55763Re-query CCDS DB by CCDS ID:3502.1Re-query CCDS DB by GeneID:55763See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346134.11 ENSP00000326514.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346134.11Link to Ensembl Protein Viewer:ENSP00000326514.7Re-query CCDS DB by Nucleotide ID:ENST00000346134Re-query CCDS DB by Protein ID:ENSP00000326514
Original member Current member EBI ENST00000381295.7 ENSP00000370695.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381295.7Link to Ensembl Protein Viewer:ENSP00000370695.2Re-query CCDS DB by Nucleotide ID:ENST00000381295Re-query CCDS DB by Protein ID:ENSP00000370695
Original member Current member NCBI NM_001024924.2 NP_001020095.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001024924.2Link to Protein Sequence:NP_001020095.1Re-query CCDS DB by Nucleotide ID:NM_001024924Re-query CCDS DB by Protein ID:NP_001020095Link to BLAST:NP_001020095.1
Original member Current member NCBI NM_018261.4 NP_060731.2 Accepted alive Link to Nucleotide Sequence:NM_018261.4Link to Protein Sequence:NP_060731.2Re-query CCDS DB by Nucleotide ID:NM_018261Re-query CCDS DB by Protein ID:NP_060731Link to BLAST:NP_060731.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020095.1 894 Q9NV70-1 894 100% 0 0
NP_060731.2 894 Q9NV70-1 894 100% 0 0

Chromosomal Locations for CCDS 3502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 55858324 55858447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55860411 55860541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55864227 55864386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55868336 55868523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55870678 55870905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55871101 55871233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55871849 55871958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55877917 55878066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55883823 55883928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55888888 55888932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55890223 55890386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55891315 55891422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55892635 55892711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55893552 55893780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55896717 55896900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55899685 55899884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55902344 55902538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55904343 55904495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGACAGCAATCAAGCATGCATTACAAAGAGACATTTTTACACCAAATGATGAACGCCTGCTGAGCATTG
TGAATGTCTGCAAAGCAGGAAAAAAGAAAAAGAACTGTTTTTTATGTGCCACAGTGACAACTGAACGCCC
TGTGCAGGTTAAGGTGGTCAAAGTCAAGAAATCCGATAAGGGAGATTTCTACAAAAGGCAGATTGCATGG
GCCCTTCGAGATCTTGCTGTGGTAGATGCCAAAGATGCTATCAAAGAAAATCCTGAATTTGATTTACACT
TTGAAAAAATATATAAATGGGTTGCCAGCAGCACTGCTGAAAAGAATGCATTTATTTCATGCATTTGGAA
ATTGAATCAGCGATATCTCCGGAAGAAAATTGATTTTGTCAATGTTAGCTCACAGCTTTTGGAAGAATCT
GTTCCAAGTGGAGAAAATCAGAGTGTGACAGGAGGTGATGAAGAAGTAGTAGATGAATACCAAGAGTTAA
ATGCAAGAGAAGAACAGGATATCGAAATAATGATGGAAGGCTGTGAATATGCAATCTCGAATGCGGAAGC
CTTTGCAGAAAAATTGTCCAGAGAGCTGCAGGTGCTAGATGGGGCTAACATCCAGTCAATCATGGCATCT
GAAAAACAAGTCAACATCCTGATGAAATTGCTAGATGAGGCTCTAAAGGAGGTAGATCAGATTGAATTGA
AACTGAGCAGTTATGAGGAAATGCTCCAAAGTGTAAAAGAACAAATGGATCAGATCTCTGAAAGCAACCA
CCTAATTCATCTTAGTAACACTAATAATGTAAAACTCCTATCTGAGATAGAGTTCCTTGTGAACCACATG
GACTTGGCCAAAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTGCTTCTTCCAGAGGCATTGAGGCCT
GCACCAATGCTGCTGATGCCCTTCTGCAGTGCATGAATGTAGCTCTTCGACCAGGCCATGACTTGCTTCT
GGCAGTCAAACAGCAACAGCAGCGATTCAGTGATTTGCGAGAGCTTTTTGCCCGGAGACTGGCCAGTCAC
CTCAACAATGTTTTTGTTCAACAGGGTCATGATCAGAGTTCGACTCTTGCCCAACACTCTGTTGAACTGA
CTTTACCCAATCATCATCCATTTCATAGAGATTTGCTCCGATATGCCAAGCTGATGGAGTGGCTAAAGAG
TACAGATTATGGAAAATATGAAGGACTAACAAAGAATTACATGGATTATTTATCCCGACTATATGAAAGA
GAAATCAAAGATTTCTTTGAAGTTGCAAAGATCAAGATGACTGGCACAACTAAAGAAAGCAAGAAGTTTG
CTACACTGCCTCGAAAAGAAAGTGCTGTCAAACAGGAAACAGAGAGTCTTCATGGAAGTTCGGGGAAATT
AACTGGATCTACTTCTAGTCTAAATAAGCTCAGTGTTCAGAGTTCAGGGAATCGCAGATCTCAGTCATCT
TCCCTGTTGGATATGGGAAACATGTCTGCCTCTGATCTCGATGTTGCTGACAGGACCAAATTTGATAAGA
TCTTTGAACAGGTACTAAGTGAACTGGAGCCCCTATGTCTGGCAGAACAGGACTTCATAAGTAAATTTTT
CAAACTACAGCAACATCAAAGTATGCCTGGAACTATGGCTGAAGCAGAGGACCTGGATGGAGGAACATTA
TCACGGCAACATAATTGTGGCACACCACTGCCTGTTTCATCTGAGAAAGATATGATCCGCCAAATGATGA
TTAAAATATTTCGCTGCATTGAGCCAGAGCTGAACAACCTAATTGCATTAGGAGACAAAATTGATAGCTT
TAACTCTCTTTATATGTTAGTCAAAATGAGTCATCATGTGTGGACTGCACAAAATGTGGACCCTGCTTCT
TTCCTAAGTACTACATTGGGAAATGTTTTGGTGACTGTCAAAAGGAACTTTGACAAATGCATTAGTAACC
AAATAAGGCAAATGGAAGAAGTAAAGATCTCAAAAAAGAGTAAAGTTGGAATTCTTCCATTTGTTGCTGA
ATTTGAAGAATTTGCTGGACTTGCAGAATCAATCTTCAAAAATGCTGAGCGTCGTGGAGACCTGGATAAA
GCATACACCAAACTTATCAGAGGAGTATTTGTTAATGTGGAGAAAGTAGCAAATGAAAGCCAGAAGACCC
CCAGGGATGTGGTTATGATGGAAAACTTTCACCATATTTTTGCAACTCTTTCTCGATTGAAAATCTCATG
TCTAGAAGCAGAAAAAAAAGAAGCCAAACAAAAATACACAGATCACCTTCAGTCTTATGTCATTTACTCT
TTAGGACAACCTCTTGAAAAACTAAATCATTTCTTTGAAGGTGTTGAAGCTCGCGTGGCACAGGGCATAA
GGGAGGAGGAAGTAAGTTACCAACTTGCATTTAACAAACAAGAACTTCGTAAAGTCATTAAGGAGTACCC
TGGAAAGGAAGTAAAAAAAGGTCTAGATAACCTCTACAAGAAAGTTGATAAACATTTATGTGAAGAAGAG
AACTTACTTCAGGTGGTGTGGCACTCCATGCAAGATGAATTTATACGCCAGTATAAGCACTTTGAAGGTT
TGATAGCTCGCTGTTATCCTGGATCTGGTGTTACAATGGAATTCACTATTCAGGACATTCTGGATTATTG
TTCCAGCATTGCACAGTCCCACTAA

Translation (894 aa):
MTAIKHALQRDIFTPNDERLLSIVNVCKAGKKKKNCFLCATVTTERPVQVKVVKVKKSDKGDFYKRQIAW
ALRDLAVVDAKDAIKENPEFDLHFEKIYKWVASSTAEKNAFISCIWKLNQRYLRKKIDFVNVSSQLLEES
VPSGENQSVTGGDEEVVDEYQELNAREEQDIEIMMEGCEYAISNAEAFAEKLSRELQVLDGANIQSIMAS
EKQVNILMKLLDEALKEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEIEFLVNHM
DLAKGHIKALQEGDLASSRGIEACTNAADALLQCMNVALRPGHDLLLAVKQQQQRFSDLRELFARRLASH
LNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLKSTDYGKYEGLTKNYMDYLSRLYER
EIKDFFEVAKIKMTGTTKESKKFATLPRKESAVKQETESLHGSSGKLTGSTSSLNKLSVQSSGNRRSQSS
SLLDMGNMSASDLDVADRTKFDKIFEQVLSELEPLCLAEQDFISKFFKLQQHQSMPGTMAEAEDLDGGTL
SRQHNCGTPLPVSSEKDMIRQMMIKIFRCIEPELNNLIALGDKIDSFNSLYMLVKMSHHVWTAQNVDPAS
FLSTTLGNVLVTVKRNFDKCISNQIRQMEEVKISKKSKVGILPFVAEFEEFAGLAESIFKNAERRGDLDK
AYTKLIRGVFVNVEKVANESQKTPRDVVMMENFHHIFATLSRLKISCLEAEKKEAKQKYTDHLQSYVIYS
LGQPLEKLNHFFEGVEARVAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKVDKHLCEEE
NLLQVVWHSMQDEFIRQYKHFEGLIARCYPGSGVTMEFTIQDILDYCSSIAQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH