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Report for CCDS34521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34521.1 Public Homo sapiens 6 RSPH4A 24 110 108 CCDS HistoryNCBI Gene:345895Re-query CCDS DB by CCDS ID:34521.1Re-query CCDS DB by GeneID:345895See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34521.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229554.10 ENSP00000229554.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229554.10Link to Ensembl Protein Viewer:ENSP00000229554.5Re-query CCDS DB by Nucleotide ID:ENST00000229554Re-query CCDS DB by Protein ID:ENSP00000229554
Original member Current member NCBI NM_001010892.3 NP_001010892.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010892.3Link to Protein Sequence:NP_001010892.1Re-query CCDS DB by Nucleotide ID:NM_001010892Re-query CCDS DB by Protein ID:NP_001010892Link to BLAST:NP_001010892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010892.1 716 Q5TD94-1 716 100% 0 0

Chromosomal Locations for CCDS 34521.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116616624 116617309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116622768 116623002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116627629 116628369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116629567 116629702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116630435 116630552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116632207 116632441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGAGGACTCAACCTCCCCGAAGCAAGAAAAAGAAAACCAAGAAGAACTAGGGGAAACAAGGCGGCCAT
GGGAAGGAAAGACAGCAGCTTCTCCCCAATATTCTGAGCCTGAGTCGTCTGAGCCCTTGGAGGCGAAGCA
GGGGCCAGAAACTGGACGCCAGTCCCGAAGCAGCCGTCCTTGGAGCCCGCAGTCTAGAGCCAAGACGCCT
CTGGGTGGCCCCGCGGGACCAGAAACATCATCACCTGCTCCTGTCTCTCCGCGGGAGCCCTCTTCCTCTC
CTTCTCCCCTGGCTCCGGCCAGACAAGACCTCGCGGCACCACCTCAGTCGGACAGGACCACGAGTGTGAT
TCCTGAAGCTGGGACACCTTATCCTGATCCTTTGGAACAATCATCTGATAAAAGAGAATCAACTCCTCAT
CACACAAGCCAGTCAGAAGGAAACACCTTTCAACAGTCTCAGCAACCCAAACCCCACCTGTGTGGACGAA
GGGACGTGAGCTATAACAACGCTAAACAGAAAGAGCTGAGATTTGACGTTTTTCAGGAGGAAGACTCAAA
CAGTGACTATGATTTACAGCAGCCGGCGCCTGGGGGCTCTGAAGTGGCCCCCAGCATGCTTGAGATCACC
ATTCAGAATGCTAAGGCTTACCTGCTGAAGACTAGCAGCAATTCGGGCTTTAATCTATATGATCATCTTT
CTAATATGTTGACCAAGATATTAAATGAGCGTCCTGAAAATGCTGTTGACATCTTTGAAAATATTAGCCA
AGATGTGAAGATGGCACATTTTAGTAAAAAATTTGATGCACTACAAAATGAGAATGAGTTGCTTCCAACA
TATGAAATAGCAGAAAAGCAAAAGGCTCTTTTTCTCCAGGGACATTTGGAAGGAGTTGACCAAGAATTGG
AAGATGAAATAGCAGAAAACGCTCTTCCAAATGTAATGGAGTCAGCTTTTTATTTTGAACAAGCTGGAGT
TGGTTTGGGCACAGATGAGACATACCGCATATTTCTTGCCCTCAAGCAGCTTACTGATACCCACCCAATC
CAAAGATGCCGCTTCTGGGGAAAGATCTTGGGTCTGGAAATGAATTATATTGTAGCTGAAGTGGAATTTC
GTGAGGGGGAAGATGAAGAGGAAGTGGAAGAGGAAGATGTAGCTGAAGAGAGGGACAATGGAGAAAGTGA
AGCTCATGAAGATGAGGAAGATGAATTACCAAAGTCCTTTTACAAGGCCCCACAGGCTATACCAAAAGAA
GAAAGTAGAACAGGTGCCAACAAATATGTCTATTTTGTTTGCAATGAACCAGGAAGACCATGGGTGAAGT
TACCACCAGTTATACCTGCACAAATTGTTATTGCAAGAAAAATCAAGAAATTTTTCACTGGGCGATTGGA
TGCTCCCATCATAAGCTACCCACCTTTCCCAGGAAATGAGAGTAATTATTTACGAGCACAAATTGCCCGA
ATTTCAGCAGGAACCCACGTCAGTCCTCTAGGATTTTATCAGTTTGGTGAAGAGGAAGGAGAGGAGGAGG
AAGAGGCAGAAGGTGGGCGAAATAGCTTTGAGGAAAACCCTGATTTTGAAGGCATCCAAGTGATTGATCT
AGTAGAATCCCTATCCAATTGGGTTCATCATGTACAGCATATTCTCTCTCAGGGTCGCTGTAATTGGTTC
AACTCCATACAAAAAAATGAGGAAGAAGAAGAGGAAGAAGATGAAGAAAAAGACGATTCTGACTACATAG
AACAGGAAGTGGGGCTTCCTCTTTTGACACCAATCTCTGAAGATTTAGAGATTCAGAATATACCCCCCTG
GACAACACGGTTATCCTCAAATCTCATTCCACAATATGCTATTGCAGTCCTTCAATCCAACCTTTGGCCT
GGAGCATATGCCTTCTCCAATGGCAAAAAGTTTGAAAATTTCTACATAGGCTGGGGTCATAAGTATAGTC
CAGACAATTATACACCCCCAGTTCCACCACCAGTTTATCAAGAATACCCCAGTGGACCAGAAATTACAGA
AATGGATGATCCTAGTGTGGAGGAGGAGCAGGCTTTCAGGGCTGCACAAGAAGCAGTTCTACTCGCAGCT
GAGAATGAAGAATCTGAGGAAGATGAAGATGAGGAAGATGATTATGACTAA

Translation (716 aa):
MEDSTSPKQEKENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSPQSRAKTP
LGGPAGPETSSPAPVSPREPSSSPSPLAPARQDLAAPPQSDRTTSVIPEAGTPYPDPLEQSSDKRESTPH
HTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKELRFDVFQEEDSNSDYDLQQPAPGGSEVAPSMLEIT
IQNAKAYLLKTSSNSGFNLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPT
YEIAEKQKALFLQGHLEGVDQELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPI
QRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKE
ESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIAR
ISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVESLSNWVHHVQHILSQGRCNWF
NSIQKNEEEEEEEDEEKDDSDYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWP
GAYAFSNGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAAQEAVLLAA
ENEESEEDEDEEDDYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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