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Report for CCDS340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
340.1 Public Homo sapiens 1 SNRNP40 24 110 108 CCDS HistoryNCBI Gene:9410Re-query CCDS DB by CCDS ID:340.1Re-query CCDS DB by GeneID:9410See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263694.9 ENSP00000263694.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263694.9Link to Ensembl Protein Viewer:ENSP00000263694.4Re-query CCDS DB by Nucleotide ID:ENST00000263694Re-query CCDS DB by Protein ID:ENSP00000263694
Original member Current member NCBI NM_004814.3 NP_004805.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004814.3Link to Protein Sequence:NP_004805.2Re-query CCDS DB by Nucleotide ID:NM_004814Re-query CCDS DB by Protein ID:NP_004805Link to BLAST:NP_004805.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004805.2 357 Q96DI7-1 357 100% 0 0

Chromosomal Locations for CCDS 340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31260072 31260121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31261529 31261632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31267871 31267932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31269158 31269240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31271379 31271499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31281374 31281496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31289254 31289419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31291913 31292006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31293219 31293348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31296611 31296751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGATAGAACAGCAGAAGCGTAAGGGCCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGT
TG
CTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGCGACGCCGGGAGCCTTGCTGCAAGC
G
GGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGTCTAC
TGC
TGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGA
AT
GTCTATGGTGACTGTGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTA
C
AACACAGATGGCAGTATGCTTTTCTCAGCATCCACAGATAAAACCGTGGCTGTGTGGGATAGTGAAACA
GGT
GAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCCAGCCAGGAGAGGCC
CT
CAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGCTTTGGGACATCCGGAAGAAAGCAGCCAT
C
CAGACATTTCAGAACACGTACCAGGTGTTAGCTGTGACCTTCAATGACACAAGTGATCAGATTATTTCT
GGT
GGAATAGACAATGATATCAAGGTCTGGGACCTGCGCCAGAACAAGCTAACCTACACCATGAGAGGCC
AT
GCAGATTCAGTGACTGGCCTGAGTTTAAGTTCTGAAGGCTCTTATCTTTTGTCCAATGCAATGGACAA
T
ACAGTTCGTGTCTGGGATGTCCGGCCATTTGCCCCCAAAGAGAGATGTGTAAAGATATTTCAAGGAAAT
GTG
CACAACTTTGAAAAGAACCTTCTGAGATGTTCTTGGTCACCTGATGGAAGCAAAATAGCAGCTGGCT
CA
GCCGACAGGTTTGTTTATGTGTGGGATACCACAAGCAGGAGAATATTGTATAAGCTGCCCGGCCATGC
T
GGCTCCATCAATGAAGTGGCTTTCCACCCTGATGAGCCCATCATTATCTCAGCATCGAGTGACAAGAGA
CTG
TATATGGGAGAGATTCAGTGA


Translation (357 aa):
MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVY
C
CKFHPNGSTLASAGFDRLI
LLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSET
G
ERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK
LWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIIS
G
GIDNDIK
VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGN
V
HNFEK
NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKR
L
YMGEIQ




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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