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Report for CCDS33828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33828.1 Public Homo sapiens 3 QTRT2 24 110 108 CCDS HistoryNCBI Gene:79691Re-query CCDS DB by CCDS ID:33828.1Re-query CCDS DB by GeneID:79691See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281273.8 ENSP00000281273.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281273.8Link to Ensembl Protein Viewer:ENSP00000281273.4Re-query CCDS DB by Nucleotide ID:ENST00000281273Re-query CCDS DB by Protein ID:ENSP00000281273
Original member Current member NCBI NM_024638.4 NP_078914.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024638.4Link to Protein Sequence:NP_078914.1Re-query CCDS DB by Nucleotide ID:NM_024638Re-query CCDS DB by Protein ID:NP_078914Link to BLAST:NP_078914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078914.1 415 Q9H974-1 415 100% 0 0

Chromosomal Locations for CCDS 33828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 114065258 114065457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114066228 114066283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114067987 114068063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114070626 114070838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114076743 114076942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114079906 114080057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114082677 114082794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114085673 114085904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGAAGCTGAGTCTTACCAAGGTAGTTAATGGCTGTCGCCTAGGAAAAATAAAAAACCTGGGCAAAACAG
GG
GACCACACCATGGATATTCCAGGCTGCCTTCTGTATACCAAGACTGGCTCCGCCCCACACCTCACCCA
T
CACACGCTGCATAATATCCACGGGGTTCCTGCCATGGCTCAGCTTACGCTGTCATCCCTAGCAGAACAT
CAT
GAAGTCTTGACAGAATATAAAGAAGGAGTTGGAAAGTTTATAGGCATGCCAGAATCACTCTTGTACT
GC
TCCCTGCACGATCCAGTCAGCCCCTGCCCGGCTGGTTATGTAACAAACAAGTCTGTGTCTGTGTGGAG
T
GTTGCAGGACGAGTGGAAATGACTGTTTCCAAGTTCATGGCAATTCAGAAGGCCCTTCAGCCAGACTGG
TTC
CAGTGCCTCTCCGATGGAGAAGTATCTTGTAAGGAAGCAACTTCCATAAAAAGGGTCAGAAAGTCTG
TT
GACCGATCACTTCTTTTCTTGGATAACTGTCTGCGGCTGCAGGAAGAGTCAGAGGTTCTTCAGAAGAG
T
GTGATCATTGGAGTGATTGAAGGTGGAGATGTGATGGAAGAGAGGCTGAGGTCAGCACGAGAGACAGCC
AAG
CGGCCTGTGGGTGGCTTCCTTCTGGATGGTTTTCAAGGAAATCCAACAACCCTGGAGGCTAGACTAC
GC
TTGCTGTCATCAGTCACTGCAGAGCTGCCGGAGGACAAGCCAAGGCTCATATCTGGTGTTAGTCGGCC
A
GATGAGGTGCTCGAGTGTATTGAAAGAGGAGTGGACTTATTTGAGAGTTTTTTCCCTTATCAAGTAACA
GAG
CGGGGATGTGCCCTGACTTTCAGTTTTGATTACCAGCCGAATCCTGAAGAGACACTACTACAACAAA
AT
GGAACACAAGAAGAAATAAAATGTATGGATCAAATAAAGAAAATTGAAACAACTGGTTGCAACCAAGA
A
ATAACATCATTTGAAATTAATCTGAAGGAAAAAAAGTACCAGGAGGACTTTAACCCGCTGGTGAGAGGA
TGT
TCCTGTTACTGCTGTAAGAATCACACTCGGGCATACATCCACCATCTGCTGGTGACCAATGAGCTGC
TG
GCCGGAGTCCTGCTTATGATGCACAACTTTGAACACTACTTTGGGTTTTTCCATTACATCCGGGAAGC
A
CTAAAAAGTGACAAACTGGCACAGTTGAAAGAGCTCATCCACAGGCAAGCATCTTGA


Translation (415 aa):
MKLSLTKVVNGCRLGKIKNLGKTGDHTMDIPGCLLYTKTGSAPHLTHHTLHNIHGVPAMAQLTLSSLAEH
H
EVLTEYKEGVGKFI
GMPESLLYCSLHDPVSPCPAGYVTNKSVSVWSVAGRVEMTVSKFMAIQKALQPDW
F
QCLSDGEVSCKEATSIKRVRKSVDRSLLFLDNCLRLQEESE
VLQKSVIIGVIEGGDVMEERLRSARETA
K
RPVGGFLLDGFQGNPTTLEARLRLLSSVTAELPEDKP
RLISGVSRPDEVLECIERGVDLFESFFPYQVT
E
RGCALTFSFDYQPNPEET
LLQQNGTQEEIKCMDQIKKIETTGCNQEITSFEINLKEKKYQEDFNPLVRG
C
SCYCCKNHTRAYIHHLLVTNELLAGVLLMMHNFEHYFGFFHYIREALKSDKLAQLKELIHRQAS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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