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Report for CCDS32735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32735.1 Public Homo sapiens 17 RECQL5 24 110 108 CCDS HistoryNCBI Gene:9400Re-query CCDS DB by CCDS ID:32735.1Re-query CCDS DB by GeneID:9400See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32735.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340830.9 ENSP00000341983.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340830.9Link to Ensembl Protein Viewer:ENSP00000341983.5Re-query CCDS DB by Nucleotide ID:ENST00000340830Re-query CCDS DB by Protein ID:ENSP00000341983
Original member Current member EBI ENST00000584999.1 ENSP00000462248.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000584999.1Link to Ensembl Protein Viewer:ENSP00000462248.1Re-query CCDS DB by Nucleotide ID:ENST00000584999Re-query CCDS DB by Protein ID:ENSP00000462248
Original member Current member NCBI NM_001003715.4 NP_001003715.1 Accepted alive Link to Nucleotide Sequence:NM_001003715.4Link to Protein Sequence:NP_001003715.1Re-query CCDS DB by Nucleotide ID:NM_001003715Re-query CCDS DB by Protein ID:NP_001003715Link to BLAST:NP_001003715.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003715.1 435 O94762-3 435 100% 0 0

Chromosomal Locations for CCDS 32735.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75650640 75650718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75651186 75651265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75658298 75658460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75660955 75661066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75661606 75661708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75662479 75662997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75665051 75665172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75666428 75666557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGAGCAGCCACCATACCACCTTTCCTTTTGACCCTGAGCGGCGAGTCCGGAGTACGCTGAAGAAGGTCT
TT
GGGTTTGACTCTTTTAAGACGCCTTTACAGGAGAGTGCGACCATGGCTGTAGTAAAAGGTAACAAGGA
C
GTCTTTGTGTGCATGCCCACAGGGGCAGGAAAATCCCTATGCTATCAGCTCCCTGCTCTGTTGGCCAAA
GGC
ATCACCATTGTAGTCTCTCCTCTCATTGCTTTGATTCAGGACCAAGTGGACCACTTGCTAACCCTAA
AG
GTACGAGTAAGTTCCCTGAACTCGAAGCTCTCTGCACAGGAAAGGAAGGAGCTGCTTGCTGACCTGGA
G
CGAGAAAAGCCCCAGACCAAGATTCTGTACATCACCCCAGAGATGGCAGCTTCATCCTCCTTCCAGCCC
ACC
CTGAACTCCCTGGTGTCCCGCCACCTGCTGTCTTACTTGGTGGTGGATGAAGCTCATTGTGTTTCCC
AA
TGGGGGCATGACTTTCGTCCTGACTACTTGCGTCTGGGTGCCCTGCGCTCCCGCCTGGGACATGCCCC
T
TGTGTGGCTCTGACCGCCACAGCCACCCCACAGGTCCAAGAGGACGTGTTTGCTGCCCTGCACCTGAAG
AAA
CCAGTTGCCATCTTCAAGACTCCCTGCTTCCGGGCCAACCTCTTCTATGATGTGCAATTCAAGGAAC
TG
ATTTCTGATCCCTATGGGAACCTGAAGGACTTCTGCCTTAAGGCTCTTGGACAGGAGGCTGATAAAGG
G
TTATCTGGCTGCGGCATTGTGTACTGCAGGACTAGAGAGGCTTGTGAACAGCTGGCCATAGAGCTCAGC
TGC
AGGGGTGTGAACGCCAAGGCTTACCATGCAGGGCTGAAGGCCTCTGAAAGAACGCTGGTGCAGAACG
AC
TGGATGGAGGAGAAGGTCCCTGTAATTGTTGCAACCATTAGTTTTGGGATGGGAGTGGATAAAGCCAA
T
GTCAGGTTTGTCGCCCATTGGAATATTGCCAAGTCTATGGCTGGGTACTACCAGGAGTCTGGCCGGGCT
GGC
AGGGATGGGAAGCCTTCCTGGTGCCGTCTCTATTACTCCAGGAATGACCGGGACCAAGTCAGCTTCC
TG
ATCAGGAAGGAAGTAGCAAAACTCCAGGAAAAGAGAGGAAACAAAGCATCTGATAAAGCCACTATCAT
G
GCCTTTGATGCCCTGGTGACCTTCTGTGAAGAACTGGGGCGATGGGGCAGGGGCCACGGAAAGAGTCTG
AGG
GCTGCTTGGTGTAGTCAGGTTGTGTCCAGGCATGCGGAGCTGTGA


Translation (435 aa):
MSSHHTTFPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK
G
ITIVVSPLIALIQ
DQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQP
T
LNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLK
K
PVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKG
LSGCGIVYCRTREACEQLAIELS
C
RGVNAKAYHA
GLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRA
G
RDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ
EKRGNKASDKATIMAFDALVTFCEELGRWGRGHGKSL
R
AAWCSQVVSRHAEL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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