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Report for CCDS32531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32531.1 Public Homo sapiens 17 ITGAE 24 110 108 CCDS HistoryNCBI Gene:3682Re-query CCDS DB by CCDS ID:32531.1Re-query CCDS DB by GeneID:3682See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32531.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263087.9 ENSP00000263087.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263087.9Link to Ensembl Protein Viewer:ENSP00000263087.4Re-query CCDS DB by Nucleotide ID:ENST00000263087Re-query CCDS DB by Protein ID:ENSP00000263087
Original member Current member NCBI NM_002208.5 NP_002199.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002208.5Link to Protein Sequence:NP_002199.3Re-query CCDS DB by Nucleotide ID:NM_002208Re-query CCDS DB by Protein ID:NP_002199Link to BLAST:NP_002199.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002199.3 1179 P38570 1179 100% 0 0

Chromosomal Locations for CCDS 32531.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3714847 3714942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3716688 3716798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3720307 3720402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3723288 3723383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3723688 3723744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3727919 3728026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3728105 3728168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3729478 3729555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3731104 3731183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3732368 3732466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3734817 3734949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3739805 3739878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3743489 3743617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3745764 3745927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3747922 3748052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3750352 3750482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3751650 3751874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3753290 3753430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3753783 3753925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3755117 3755261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3755830 3755897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3756984 3757134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3757706 3757859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3759402 3759553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3760172 3760287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3761013 3761177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3761403 3761520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3761915 3761982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3763869 3763960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3777540 3777660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3801111 3801144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3540 nt):
ATGTGGCTCTTCCACACTCTGCTCTGCATAGCCAGCCTGGCCCTGCTGGCCGCTTTCAATGTGGATGTGG
CCCGGCCCTGGCTCACGCCCAAGGGAGGTGCCCCTTTCGTGCTCAGCTCCCTTCTGCACCAAGACCCCAG
CACCAACCAGACCTGGCTCCTGGTCACCAGCCCCAGAACCAAGAGGACACCAGGGCCCCTCCATCGATGT
TCCCTTGTCCAGGATGAAATCCTTTGCCATCCTGTAGAGCATGTCCCCATCCCCAAGGGGAGGCACCGGG
GAGTGACCGTTGTCCGGAGCCACCACGGTGTTTTGATATGCATTCAAGTGCTGGTCCGGCGGCCTCACAG
CCTCAGCTCAGAACTCACAGGCACCTGTAGCCTCCTGGGCCCTGACCTCCGTCCCCAGGCTCAGGCCAAC
TTCTTCGACCTTGAAAATCTCCTGGATCCAGATGCACGTGTGGACACTGGAGACTGCTACAGCAACAAAG
AAGGCGGTGGAGAAGACGATGTGAACACAGCCAGGCAGCGCCGGGCTCTGGAGAAGGAGGAGGAGGAAGA
CAAGGAGGAGGAGGAAGACGAGGAGGAGGAGGAAGCTGGCACCGAGATTGCCATCATCCTGGATGGCTCA
GGAAGCATTGATCCCCCAGACTTTCAGAGAGCCAAAGACTTCATCTCCAACATGATGAGGAACTTCTATG
AAAAGTGTTTTGAGTGCAACTTTGCCTTGGTGCAGTATGGAGGAGTGATCCAGACTGAGTTTGACCTTCG
GGACAGCCAGGATGTGATGGCCTCCCTCGCCAGAGTCCAGAACATCACTCAAGTGGGGAGTGTCACCAAG
ACTGCCTCAGCCATGCAACACGTCTTAGACAGCATCTTCACCTCAAGCCACGGCTCCAGGAGAAAGGCAT
CCAAGGTCATGGTGGTGCTCACCGATGGTGGCATATTCGAGGACCCCCTCAACCTTACGACAGTCATCAA
CTCCCCCAAAATGCAGGGTGTTGAGCGCTTTGCCATTGGGGTGGGAGAAGAATTTAAGAGTGCTAGGACT
GCGAGGGAACTGAACCTGATCGCCTCAGACCCGGATGAGACCCATGCTTTCAAGGTGACCAACTACATGG
CGCTGGATGGGCTGCTGAGCAAACTGCGGTACAACATCATCAGCATGGAAGGCACGGTTGGAGACGCCCT
TCACTACCAGCTGGCACAGATTGGCTTCAGTGCTCAGATCCTGGATGAGCGGCAGGTGCTGCTCGGCGCC
GTCGGGGCCTTTGACTGGTCCGGAGGGGCGTTGCTCTACGACACACGCAGCCGCCGGGGCCGCTTCCTGA
ACCAGACAGCGGCGGCGGCGGCAGACGCGGAGGCTGCGCAGTACAGCTACCTGGGTTACGCTGTGGCCGT
GCTGCACAAGACCTGCAGCCTCTCCTACATCGCGGGGGCTCCACGGTACAAACATCATGGGGCCGTGTTT
GAGCTCCAGAAGGAGGGCAGAGAGGCCAGCTTCCTGCCAGTGCTGGAGGGAGAGCAGATGGGGTCCTATT
TTGGCTCTGAGCTGTGCCCTGTGGACATTGACATGGATGGAAGCACGGACTTCTTGCTGGTGGCTGCTCC
ATTTTACCACGTTCATGGAGAAGAAGGCAGAGTCTACGTGTACCGTCTCAGCGAGCAGGATGGTTCTTTC
TCCTTGGCACGCATACTGAGTGGGCACCCCGGGTTCACCAATGCCCGCTTTGGCTTTGCCATGGCGGCTA
TGGGGGATCTCAGTCAGGATAAGCTCACAGATGTGGCCATCGGGGCCCCCCTGGAAGGTTTTGGGGCAGA
TGATGGTGCCAGCTTCGGCAGTGTGTATATCTACAATGGACACTGGGACGGCCTCTCCGCCAGCCCCTCG
CAGCGGATCAGAGCCTCCACGGTGGCCCCAGGACTCCAGTACTTCGGCATGTCCATGGCTGGTGGCTTTG
ATATTAGTGGCGACGGCCTTGCCGACATCACCGTGGGCACTCTGGGCCAGGCGGTTGTGTTCCGCTCCCG
GCCTGTGGTTCGCCTGAAGGTCTCCATGGCCTTCACCCCCAGCGCACTGCCCATCGGCTTCAACGGCGTC
GTGAATGTCCGTTTATGTTTTGAAATCAGCTCTGTAACCACAGCCTCTGAGTCAGGCCTCCGCGAGGCAC
TTCTCAACTTCACGCTGGATGTGGATGTGGGGAAGCAGAGGAGACGGCTGCAGTGTTCAGACGTAAGAAG
CTGTCTGGGCTGCCTGAGGGAGTGGAGCAGCGGATCCCAGCTTTGTGAGGACCTCCTGCTCATGCCCACA
GAGGGAGAGCTCTGTGAGGAGGACTGCTTCTCCAATGCCAGTGTCAAAGTCAGCTACCAGCTCCAGACCC
CTGAGGGACAGACGGACCATCCCCAGCCCATCCTGGACCGCTACACTGAGCCCTTTGCCATCTTCCAGCT
GCCCTATGAGAAGGCCTGCAAGAATAAGCTGTTTTGTGTCGCAGAATTACAGTTGGCCACCACCGTCTCT
CAGCAGGAGTTGGTGGTGGGTCTCACAAAGGAGCTGACCCTGAACATTAACCTAACTAACTCCGGGGAAG
ATTCCTACATGACAAGCATGGCCTTGAATTACCCCAGAAACCTGCAGTTGAAGAGGATGCAAAAGCCTCC
CTCTCCAAACATTCAGTGTGATGACCCTCAGCCGGTTGCTTCTGTCCTGATCATGAACTGCAGGATTGGT
CACCCCGTCCTCAAGAGGTCATCTGCTCATGTTTCAGTCGTTTGGCAGCTAGAGGAGAATGCCTTTCCAA
ACAGGACAGCAGACATCACTGTGACTGTCACCAATTCCAATGAAAGACGGTCTTTGGCCAACGAGACCCA
CACCCTTCAATTCAGGCATGGCTTCGTTGCAGTTCTGTCCAAACCATCCATAATGTACGTGAACACAGGC
CAGGGGCTTTCTCACCACAAAGAATTCCTCTTCCATGTACATGGGGAGAACCTCTTTGGAGCAGAATACC
AGTTGCAAATTTGCGTCCCAACCAAATTACGAGGTCTCCAGGTTGTAGCAGTGAAGAAGCTGACGAGGAC
TCAGGCCTCCACGGTGTGCACCTGGAGTCAGGAGCGCGCTTGTGCGTACAGTTCGGTTCAGCATGTGGAA
GAATGGCATTCAGTGAGCTGTGTCATCGCTTCAGATAAAGAAAATGTCACCGTGGCTGCAGAGATCTCCT
GGGATCACTCTGAGGAGTTACTAAAAGATGTAACTGAACTGCAGATCCTTGGTGAAATATCTTTCAACAA
ATCTCTATATGAGGGACTGAATGCAGAGAACCACAGAACTAAGATCACTGTCGTCTTCCTGAAAGATGAG
AAGTACCATTCTTTGCCTATCATCATTAAAGGCAGCGTTGGTGGACTTCTGGTGTTGATCGTGATTCTGG
TCATCCTGTTCAAGTGTGGCTTTTTTAAAAGAAAATATCAACAACTGAACTTGGAGAGCATCAGGAAGGC
CCAGCTGAAATCAGAGAATCTGCTCGAAGAAGAGAATTAG

Translation (1179 aa):
MWLFHTLLCIASLALLAAFNVDVARPWLTPKGGAPFVLSSLLHQDPSTNQTWLLVTSPRTKRTPGPLHRC
SLVQDEILCHPVEHVPIPKGRHRGVTVVRSHHGVLICIQVLVRRPHSLSSELTGTCSLLGPDLRPQAQAN
FFDLENLLDPDARVDTGDCYSNKEGGGEDDVNTARQRRALEKEEEEDKEEEEDEEEEEAGTEIAIILDGS
GSIDPPDFQRAKDFISNMMRNFYEKCFECNFALVQYGGVIQTEFDLRDSQDVMASLARVQNITQVGSVTK
TASAMQHVLDSIFTSSHGSRRKASKVMVVLTDGGIFEDPLNLTTVINSPKMQGVERFAIGVGEEFKSART
ARELNLIASDPDETHAFKVTNYMALDGLLSKLRYNIISMEGTVGDALHYQLAQIGFSAQILDERQVLLGA
VGAFDWSGGALLYDTRSRRGRFLNQTAAAAADAEAAQYSYLGYAVAVLHKTCSLSYIAGAPRYKHHGAVF
ELQKEGREASFLPVLEGEQMGSYFGSELCPVDIDMDGSTDFLLVAAPFYHVHGEEGRVYVYRLSEQDGSF
SLARILSGHPGFTNARFGFAMAAMGDLSQDKLTDVAIGAPLEGFGADDGASFGSVYIYNGHWDGLSASPS
QRIRASTVAPGLQYFGMSMAGGFDISGDGLADITVGTLGQAVVFRSRPVVRLKVSMAFTPSALPIGFNGV
VNVRLCFEISSVTTASESGLREALLNFTLDVDVGKQRRRLQCSDVRSCLGCLREWSSGSQLCEDLLLMPT
EGELCEEDCFSNASVKVSYQLQTPEGQTDHPQPILDRYTEPFAIFQLPYEKACKNKLFCVAELQLATTVS
QQELVVGLTKELTLNINLTNSGEDSYMTSMALNYPRNLQLKRMQKPPSPNIQCDDPQPVASVLIMNCRIG
HPVLKRSSAHVSVVWQLEENAFPNRTADITVTVTNSNERRSLANETHTLQFRHGFVAVLSKPSIMYVNTG
QGLSHHKEFLFHVHGENLFGAEYQLQICVPTKLRGLQVVAVKKLTRTQASTVCTWSQERACAYSSVQHVE
EWHSVSCVIASDKENVTVAAEISWDHSEELLKDVTELQILGEISFNKSLYEGLNAENHRTKITVVFLKDE
KYHSLPIIIKGSVGGLLVLIVILVILFKCGFFKRKYQQLNLESIRKAQLKSENLLEEEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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