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Report for CCDS31991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31991.1 Public Homo sapiens 13 PIBF1 24 110 108 CCDS HistoryNCBI Gene:10464Re-query CCDS DB by CCDS ID:31991.1Re-query CCDS DB by GeneID:10464See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31991.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326291.11 ENSP00000317144.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326291.11Link to Ensembl Protein Viewer:ENSP00000317144.6Re-query CCDS DB by Nucleotide ID:ENST00000326291Re-query CCDS DB by Protein ID:ENSP00000317144
Original member Current member NCBI NM_006346.4 NP_006337.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006346.4Link to Protein Sequence:NP_006337.2Re-query CCDS DB by Nucleotide ID:NM_006346Re-query CCDS DB by Protein ID:NP_006337Link to BLAST:NP_006337.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006337.2 757 Q8WXW3-1 757 100% 0 0

Chromosomal Locations for CCDS 31991.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 72783470 72783721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72792447 72792547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72795359 72795557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72797907 72798026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72821849 72821982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72827010 72827118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72827733 72827914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72835243 72835368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72854057 72854155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72893784 72893949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72908531 72908681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72917076 72917166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72931165 72931267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72965274 72965404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72973591 72973675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72998822 72998995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73015869 73015919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGTCTCGAAAAATTTCAAAGGAGTCAAAAAAAGTGAACATCTCTAGTTCTCTGGAATCTGAAGATATTA
GTTTAGAAACAACAGTTCCTACGGATGATATTTCCTCATCAGAAGAGCGAGAGGGCAAAGTCAGAATCAC
CAGGCAGCTAATTGAACGAAAAGAACTACTTCATAATATTCAGTTACTAAAAATTGAGCTATCCCAGAAA
ACTATGATGATCGACAATTTGAAAGTGGATTATCTTACAAAGATTGAAGAATTGGAGGAGAAACTTAATG
ATGCACTTCACCAGAAGCAGCTACTAACATTGAGATTAGACAACCAATTGGCTTTTCAACAGAAAGATGC
CAGCAAATATCAAGAATTAATGAAACAAGAAATGGAAACCATTTTGTTGAGACAGAAACAACTAGAAGAG
ACAAATCTTCAGCTAAGAGAAAAAGCTGGAGATGTTCGTCGAAACCTGCGTGACTTTGAGTTGACAGAAG
AGCAATATATTAAATTAAAAGCTTTTCCTGAAGATCAGCTTTCTATTCCTGAATATGTATCTGTTCGCTT
CTATGAGCTAGTGAATCCATTAAGAAAGGAAATCTGTGAACTACAAGTGAAAAAGAATATCCTAGCAGAA
GAATTAAGTACAAACAAAAACCAACTGAAGCAGCTGACAGAGACATATGAGGAAGATCGAAAAAACTACT
CTGAAGTTCAAATTAGATGTCAACGTTTGGCCTTAGAATTAGCAGACACAAAACAGTTAATTCAGCAAGG
TGACTACCGTCAAGAGAACTATGATAAAGTCAAGAGTGAACGTGATGCACTTGAACAGGAAGTAATTGAG
CTTAGGAGAAAACATGAAATACTTGAAGCCTCTCACATGATTCAAACAAAAGAACGAAGTGAATTATCAA
AAGAGGTAGTCACCTTAGAGCAAACTGTTACTTTACTGCAAAAGGATAAAGAATATCTTAATCGCCAAAA
CATGGAGCTTAGTGTTCGCTGTGCTCATGAAGAGGATCGCCTTGAAAGACTTCAAGCTCAACTGGAAGAA
AGCAAAAAGGCTAGAGAAGAGATGTATGAAAAATATGTAGCATCCAGAGACCATTATAAAACAGAATATG
AAAATAAACTACATGATGAACTAGAACAAATCAGATTGAAAACCAACCAAGAAATTGATCAACTTCGAAA
TGCCTCTAGGGAAATGTATGAACGAGAAAACAGAAATCTCCGAGAAGCAAGGGATAATGCTGTGGCTGAA
AAGGAACGAGCAGTGATGGCTGAAAAGGATGCTTTAGAAAAACACGATCAGCTCTTAGACAGGTACAGAG
AACTACAACTTAGTACAGAAAGCAAAGTAACAGAATTTCTCCATCAAAGTAAATTAAAATCTTTTGAAAG
TGAGCGTGTTCAACTTCTGCAAGAGGAAACAGCAAGAAATCTCACACAGTGTCAATTGGAATGTGAAAAA
TATCAGAAAAAATTGGAGGTTTTAACCAAAGAATTTTATAGTCTCCAAGCCTCTTCTGAAAAACGCATTA
CTGAACTTCAAGCACAGAACTCAGAGCATCAAGCAAGGCTAGACATTTATGAGAAACTGGAAAAAGAGCT
TGATGAAATAATAATGCAAACTGCAGAAATTGAAAATGAAGATGAGGCTGAAAGGGTTCTTTTTTCCTAC
GGCTATGGTGCTAATGTTCCCACAACAGCCAAAAGACGACTAAAGCAAAGTGTTCACTTGGCAAGAAGAG
TGCTTCAATTAGAAAAACAAAACTCGCTGATTTTAAAAGATCTGGAACATCGAAAGGACCAAGTAACACA
GCTTTCACAAGAGCTTGACAGAGCCAATTCGCTATTAAACCAGACTCAACAGCCTTACAGGTATCTCATT
GAATCAGTGCGTCAGAGAGATTCTAAGATTGATTCACTGACGGAATCTATTGCACAACTTGAGAAAGATG
TCAGCAACTTAAATAAAGAAAAGTCAGCTTTACTACAGACGAAGAATCAAATGGCATTAGATTTAGAACA
ACTTCTAAATCATCGTGAGGAATTGGCAGCAATGAAACAGATTCTCGTTAAGATGCATAGTAAACATTCT
GAGAACAGCTTACTTCTCACTAAAACAGAACCAAAACATGTGACAGAAAATCAGAAATCAAAGACTTTGA
ATGTGCCTAAAGAGCATGAAGACAATATATTTACACCTAAACCAACACTCTTTACTAAAAAAGAAGCACC
TGAGTGGTCTAAGAAACAAAAGATGAAGACCTAG

Translation (757 aa):
MSRKISKESKKVNISSSLESEDISLETTVPTDDISSSEEREGKVRITRQLIERKELLHNIQLLKIELSQK
TMMIDNLKVDYLTKIEELEEKLNDALHQKQLLTLRLDNQLAFQQKDASKYQELMKQEMETILLRQKQLEE
TNLQLREKAGDVRRNLRDFELTEEQYIKLKAFPEDQLSIPEYVSVRFYELVNPLRKEICELQVKKNILAE
ELSTNKNQLKQLTETYEEDRKNYSEVQIRCQRLALELADTKQLIQQGDYRQENYDKVKSERDALEQEVIE
LRRKHEILEASHMIQTKERSELSKEVVTLEQTVTLLQKDKEYLNRQNMELSVRCAHEEDRLERLQAQLEE
SKKAREEMYEKYVASRDHYKTEYENKLHDELEQIRLKTNQEIDQLRNASREMYERENRNLREARDNAVAE
KERAVMAEKDALEKHDQLLDRYRELQLSTESKVTEFLHQSKLKSFESERVQLLQEETARNLTQCQLECEK
YQKKLEVLTKEFYSLQASSEKRITELQAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERVLFSY
GYGANVPTTAKRRLKQSVHLARRVLQLEKQNSLILKDLEHRKDQVTQLSQELDRANSLLNQTQQPYRYLI
ESVRQRDSKIDSLTESIAQLEKDVSNLNKEKSALLQTKNQMALDLEQLLNHREELAAMKQILVKMHSKHS
ENSLLLTKTEPKHVTENQKSKTLNVPKEHEDNIFTPKPTLFTKKEAPEWSKKQKMKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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