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Report for CCDS31809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31809.1 Public Homo sapiens 12 KRT18 24 110 108 CCDS HistoryNCBI Gene:3875Re-query CCDS DB by CCDS ID:31809.1Re-query CCDS DB by GeneID:3875See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388835.4 ENSP00000373487.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000388835.4Link to Ensembl Protein Viewer:ENSP00000373487.3Re-query CCDS DB by Nucleotide ID:ENST00000388835Re-query CCDS DB by Protein ID:ENSP00000373487
Original member Current member EBI ENST00000388837.6 ENSP00000373489.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000388837.6Link to Ensembl Protein Viewer:ENSP00000373489.2Re-query CCDS DB by Nucleotide ID:ENST00000388837Re-query CCDS DB by Protein ID:ENSP00000373489
Original member Current member NCBI NM_000224.3 NP_000215.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000224.3Link to Protein Sequence:NP_000215.1Re-query CCDS DB by Nucleotide ID:NM_000224Re-query CCDS DB by Protein ID:NP_000215Link to BLAST:NP_000215.1
Original member Current member NCBI NM_199187.2 NP_954657.1 Accepted alive Link to Nucleotide Sequence:NM_199187.2Link to Protein Sequence:NP_954657.1Re-query CCDS DB by Nucleotide ID:NM_199187Re-query CCDS DB by Protein ID:NP_954657Link to BLAST:NP_954657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000215.1 430 P05783 430 100% 0 0
NP_954657.1 430 P05783 430 100% 0 0

Chromosomal Locations for CCDS 31809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52949174 52949590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52950328 52950410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52950750 52950906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52951481 52951645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52951731 52951856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52952119 52952342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52952722 52952842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTCCCTGGGCTCTGTCCAGGCGCCCAGCT
AC
GGCGCCCGGCCGGTCAGCAGCGCGGCCAGCGTCTATGCAGGCGCTGGGGGCTCTGGTTCCCGGATCTC
C
GTGTCCCGCTCCACCAGCTTCAGGGGCGGCATGGGGTCCGGGGGCCTGGCCACCGGGATAGCCGGGGGT
CTG
GCAGGAATGGGAGGCATCCAGAACGAGAAGGAGACCATGCAAAGCCTGAACGACCGCCTGGCCTCTT
AC
CTGGACAGAGTGAGGAGCCTGGAGACCGAGAACCGGAGGCTGGAGAGCAAAATCCGGGAGCACTTGGA
G
AAGAAGGGACCCCAGGTCAGAGACTGGAGCCATTACTTCAAGATCATCGAGGACCTGAGGGCTCAGATC
TTC
GCAAATACTGTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCCCGTCTTGCTGCTGATGACT
TT
AGAGTCAAGTATGAGACAGAGCTGGCCATGCGCCAGTCTGTGGAGAACGACATCCATGGGCTCCGCAA
G
GTCATTGATGACACCAATATCACACGACTGCAGCTGGAGACAGAGATCGAGGCTCTCAAGGAGGAGCTG
CTC
TTCATGAAGAAGAACCACGAAGAGGAAGTAAAAGGCCTACAAGCCCAGATTGCCAGCTCTGGGTTGA
CC
GTGGAGGTAGATGCCCCCAAATCTCAGGACCTCGCCAAGATCATGGCAGACATCCGGGCCCAATATGA
C
GAGCTGGCTCGGAAGAACCGAGAGGAGCTAGACAAGTACTGGTCTCAGCAGATTGAGGAGAGCACCACA
GTG
GTCACCACACAGTCTGCTGAGGTTGGAGCTGCTGAGACGACGCTCACAGAGCTGAGACGTACAGTCC
AG
TCCTTGGAGATCGACCTGGACTCCATGAGAAATCTGAAGGCCAGCTTGGAGAACAGCCTGAGGGAGGT
G
GAGGCCCGCTACGCCCTACAGATGGAGCAGCTCAACGGGATCCTGCTGCACCTTGAGTCAGAGCTGGCA
CAG
ACCCGGGCAGAGGGACAGCGCCAGGCCCAGGAGTATGAGGCCCTGCTGAACATCAAGGTCAAGCTGG
AG
GCTGAGATCGCCACCTACCGCCGCCTGCTGGAAGATGGCGAGGACTTTAATCTTGGTGATGCCTTGGA
C
AGCAGCAACTCCATGCAAACCATCCAAAAGACCACCACCCGCCGGATAGTGGATGGCAAAGTGGTGTCT
GAG
ACCAATGACACCAAAGTTCTGAGGCATTAA


Translation (430 aa):
MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAGG
L
AGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ
I
F
ANTVDNARIVLQIDNARLAADDFRV
KYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEEL
L
FMKKNHEE
EVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEESTT
V
VTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNL
KASLENSLREVEARYALQMEQLNGILLHLESELA
Q
TRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDF
NLGDALDSSNSMQTIQKTTTRRIVDGKVVS
E
TNDTKVLRH




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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