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Report for CCDS31595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31595.1 Public Homo sapiens 11 TRPT1 24 110 108 CCDS HistoryNCBI Gene:83707Re-query CCDS DB by CCDS ID:31595.1Re-query CCDS DB by GeneID:83707See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31595.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317459.11 ENSP00000314073.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317459.11Link to Ensembl Protein Viewer:ENSP00000314073.6Re-query CCDS DB by Nucleotide ID:ENST00000317459Re-query CCDS DB by Protein ID:ENSP00000314073
Original member Current member NCBI NM_001033678.4 NP_001028850.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001033678.4Link to Protein Sequence:NP_001028850.2Re-query CCDS DB by Nucleotide ID:NM_001033678Re-query CCDS DB by Protein ID:NP_001028850Link to BLAST:NP_001028850.2
Original member Current member NCBI NM_001160390.2 NP_001153862.1 Accepted alive Link to Nucleotide Sequence:NM_001160390.2Link to Protein Sequence:NP_001153862.1Re-query CCDS DB by Nucleotide ID:NM_001160390Re-query CCDS DB by Protein ID:NP_001153862Link to BLAST:NP_001153862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028850.2 253 Q86TN4-1 253 100% 0 0
NP_001153862.1 253 Q86TN4-1 253 100% 0 0

Chromosomal Locations for CCDS 31595.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64223876 64223967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224100 64224210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224285 64224341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224543 64224717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224801 64224970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64225499 64225580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64225786 64225860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAACTTCTCTGGAGGAGGGAGGCAGGAAGCAGCAGGGTCCAGGGGTAGAAGGGCTCCCAGACCCCGAG
AACAGGACCGAGACGTGCAGCTGTCCAAGGCTCTGTCCTATGCCCTGCGCCATGGGGCCTTGAAGCTGGG
GCTTCCCATGGGAGCTGATGGCTTCGTGCCCCTGGGCACCCTCCTGCAGTTGCCCCAGTTCCGCGGCTTC
TCTGCTGAAGATGTGCAGCGCGTGGTGGACACCAATAGGAAGCAGCGGTTCGCCCTGCAGCTGGGGGATC
CCAGCACTGGCCTTCTCATCCGGGCCAACCAGGGCCATTCCCTGCAGGTACCTAAGTTGGAGCTGATGCC
CCTGGAGACACCGCAGGCCCTGCCCCCGATGCTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATC
CTACTCAAAGGCCTGTCCTGCCAGGGAAGGACGCACATTCACCTGGCCCCAGGACTGCCTGGAGACCCCG
GTATCATCAGTGGCATGCGGTCCCATTGTGAAATAGCTGTGTTCATCGATGGACCCCTGGCTCTGGCAGA
TGGAATACCCTTCTTCCGCTCTGCCAATGGGGTGATTCTGACTCCAGGGAATACTGATGGCTTCCTCCTT
CCCAAGTACTTCAAGGAGGCCCTGCAGCTACGCCCTACCCGAAAGCCCCTTTCCTTGGCTGGTGATGAAG
AGACAGAGTGTCAGAGTAGCCCCAAGCACAGCTCCAGAGAAAGGAGGAGGATCCAACAATAA

Translation (253 aa):
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGTLLQLPQFRGF
SAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLETPQALPPMLVHGTFWKHWPSI
LLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLL
PKYFKEALQLRPTRKPLSLAGDEETECQSSPKHSSRERRRIQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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