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Report for CCDS3109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3109.1 Public Homo sapiens 3 RBP2 24 110 108 CCDS HistoryNCBI Gene:5948Re-query CCDS DB by CCDS ID:3109.1Re-query CCDS DB by GeneID:5948See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3109.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232217.6 ENSP00000232217.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232217.6Link to Ensembl Protein Viewer:ENSP00000232217.2Re-query CCDS DB by Nucleotide ID:ENST00000232217Re-query CCDS DB by Protein ID:ENSP00000232217
Original member Current member NCBI NM_004164.3 NP_004155.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004164.3Link to Protein Sequence:NP_004155.2Re-query CCDS DB by Nucleotide ID:NM_004164Re-query CCDS DB by Protein ID:NP_004155Link to BLAST:NP_004155.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004155.2 134 P50120 134 100% 0 0

Chromosomal Locations for CCDS 3109.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 139453116 139453166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139454729 139454830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139462112 139462290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139476387 139476459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGACAAGGGACCAGAATGGAACCTGGGAGATGGAGAGTAATGAAAACTTTGAGGGCTACATGAAGGCCC
TGGATATTGATTTTGCCACCCGCAAGATTGCAGTACGTCTCACTCAGACGAAGGTTATTGATCAAGATGG
TGATAACTTCAAGACAAAAACCACTAGCACATTCCGCAACTATGATGTGGATTTCACTGTTGGAGTAGAG
TTTGACGAGTACACAAAGAGCCTGGATAACCGGCATGTTAAGGCACTGGTCACCTGGGAAGGTGATGTCC
TTGTGTGTGTGCAAAAGGGGGAGAAGGAGAACCGCGGCTGGAAGCAGTGGATTGAGGGGGACAAGCTGTA
CCTGGAGCTGACCTGTGGTGACCAGGTGTGCCGTCAAGTGTTCAAAAAGAAATGA

Translation (134 aa):
MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRNYDVDFTVGVE
FDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLELTCGDQVCRQVFKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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