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Report for CCDS29905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29905.1 Public Mus musculus 19 Adra2a 16 104 75 CCDS HistoryNCBI Gene:11551Re-query CCDS DB by CCDS ID:29905.1Re-query CCDS DB by GeneID:11551

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Public Note for CCDS 29905.1
The 5'-most in-frame translation initiation codon is selected for this CCDS based on good conservation across mammalian species. A possible downstream start codon would result in a protein that is 15 aa shorter at the N-terminus. The downstream start codon is assumed in the literature, including in PMIDs:1353249, 8843087 and 9482787, but there is no experimental evidence indicating which start codon is preferentially used in vivo.

Sequence IDs included in CCDS 29905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000036700 ENSMUSP00000036203 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036700Link to Ensembl Protein Viewer:ENSMUSP00000036203Re-query CCDS DB by Nucleotide ID:ENSMUST00000036700Re-query CCDS DB by Protein ID:ENSMUSP00000036203
Original member Current member NCBI NM_007417.4 NP_031443.4 Accepted alive Link to Nucleotide Sequence:NM_007417.4Link to Protein Sequence:NP_031443.4Re-query CCDS DB by Nucleotide ID:NM_007417Re-query CCDS DB by Protein ID:NP_031443Link to BLink:NP_031443.4

Chromosomal Locations for CCDS 29905.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 19Link to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

Chromosome Start Stop Links
19 54046215 54047612 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGTTCCGCCAGGAGCAGCCGCTGGCCGAGGGCAGCTTTGCGCCCATGGGCTCACTGCAGCCGGATGCCG
GC
AACAGCAGCTGGAACGGGACCGAAGCGCCCGGAGGCGGCACCCGAGCCACCCCTTACTCCCTGCAGGT
G
ACACTGACGCTGGTTTGCCTGGCTGGCCTGCTCATGCTGTTCACAGTATTTGGCAACGTGCTGGTTATT
ATC
GCGGTGTTCACCAGTCGCGCGCTCAAAGCTCCCCAAAACCTCTTCCTGGTGTCCCTGGCCTCAGCGG
AC
ATCCTGGTGGCCACGCTGGTCATTCCCTTTTCTTTGGCCAACGAGGTTATGGGTTACTGGTACTTTGG
T
AAGGTGTGGTGTGAGATCTATTTGGCTCTCGACGTGCTCTTTTGCACGTCGTCCATAGTGCACCTGTGC
GCC
ATCAGCCTTGACCGCTACTGGTCCATCACGCAGGCCATCGAGTACAACCTGAAGCGCACGCCGCGTC
GC
ATCAAGGCCATCATTGTCACCGTGTGGGTCATCTCGGCTGTCATCTCCTTCCCGCCACTCATCTCCAT
A
GAGAAGAAGGGCGCTGGCGGCGGGCAGCAGCCGGCCGAGCCAAGCTGCAAGATCAACGACCAGAAGTGG
TAT
GTCATCTCCTCGTCCATCGGTTCCTTCTTCGCGCCTTGCCTCATCATGATCCTGGTCTACGTGCGTA
TT
TACCAGATCGCCAAGCGTCGCACCCGCGTGCCTCCCAGCCGCCGGGGTCCGGACGCCTGTTCCGCGCC
G
CCGGGGGGCGCCGATCGCAGGCCCAACGGGCTGGGCCCGGAGCGCGGCGCGGGTCCCACGGGCGCTGAG
GCG
GAGCCGCTGCCCACCCAGCTTAACGGTGCCCCGGGGGAGCCCGCGCCCGCCGGGCCCCGCGATGGGG
AT
GCGCTGGACCTAGAGGAGAGTTCGTCGTCCGAGCACGCCGAGCGGCCCCCGGGGCCCCGCAGACCCGA
C
CGCGGCCCCCGAGCCAAGGGCAAGACCCGGGCGAGTCAGGTGAAGCCGGGGGACAGTCTGCCGCGGCGC
GGG
CCCGGGGCCGCGGGGCCGGGGGCTTCGGGGTCCGGGCACGGAGAGGAGCGCGGCGGGGGCGCCAAAG
CG
TCGCGCTGGCGCGGGAGGCAAAACCGGGAGAAACGCTTCACGTTCGTGCTGGCGGTGGTGATCGGCGT
G
TTCGTGGTGTGTTGGTTTCCGTTCTTTTTCACCTACACGCTCATAGCGGTCGGCTGCCCGGTGCCCAGC
CAG
CTCTTCAACTTCTTCTTCTGGTTCGGCTACTGCAACAGCTCGCTGAACCCTGTTATCTACACCATCT
TC
AACCACGACTTCCGACGCGCCTTCAAGAAGATCCTCTGCCGTGGGGACAGAAAACGCATCGTGTGA


Translation (465 aa):
MFRQEQPLAEGSFAPMGSLQPDAGNSSWNGTEAPGGGTRATPYSLQVTLTLVCLAGLLMLFTVFGNVLVI
I
AVFTSRALKAPQNLFLVSLASADILVATLVIPFSLANEVMGYWYFGKVWCEIYLALDVLFCTSSIVHLC
A
ISLDRYWSITQAIEYNLKRTPRRIKAIIVTVWVISAVISFPPLISIEKKGAGGGQQPAEPSCKINDQKW
Y
VISSSIGSFFAPCLIMILVYVRIYQIAKRRTRVPPSRRGPDACSAPPGGADRRPNGLGPERGAGPTGAE
A
EPLPTQLNGAPGEPAPAGPRDGDALDLEESSSSEHAERPPGPRRPDRGPRAKGKTRASQVKPGDSLPRR
G
PGAAGPGASGSGHGEERGGGAKASRWRGRQNREKRFTFVLAVVIGVFVVCWFPFFFTYTLIAVGCPVPS
Q
LFNFFFWFGYCNSSLNPVIYTIFNHDFRRAFKKILCRGDRKRIV




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