NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29760.1 Public Mus musculus 19 Lipa 23 108 98 CCDS HistoryNCBI Gene:16889Re-query CCDS DB by CCDS ID:29760.1Re-query CCDS DB by GeneID:16889See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049572.14 ENSMUSP00000053270.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049572.14Link to Ensembl Protein Viewer:ENSMUSP00000053270.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049572Re-query CCDS DB by Protein ID:ENSMUSP00000053270
Original member Current member EBI ENSMUST00000178114.1 ENSMUSP00000136967.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178114.1Link to Ensembl Protein Viewer:ENSMUSP00000136967.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178114Re-query CCDS DB by Protein ID:ENSMUSP00000136967
Original member Current member NCBI NM_001111100.1 NP_001104570.1 Accepted alive Link to Nucleotide Sequence:NM_001111100.1Link to Protein Sequence:NP_001104570.1Re-query CCDS DB by Nucleotide ID:NM_001111100Re-query CCDS DB by Protein ID:NP_001104570Link to BLAST:NP_001104570.1
Original member Current member NCBI NM_021460.3 NP_067435.3 Accepted alive Link to Nucleotide Sequence:NM_021460.3Link to Protein Sequence:NP_067435.3Re-query CCDS DB by Nucleotide ID:NM_021460Re-query CCDS DB by Protein ID:NP_067435Link to BLAST:NP_067435.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104570.1 397 Q9Z0M5 397 100% 0 0
NP_067435.3 397 Q9Z0M5 397 100% 0 0

Chromosomal Locations for CCDS 29760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34493980 34494213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34495060 34495131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34500097 34500168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34501503 34501649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34507009 34507145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34508989 34509098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34510823 34511021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34523422 34523539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34524738 34524842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGCAACTCCAGGGCCTGGTGTTCGTTTTCACCATTGGGATCCTGCTTTCTCGGGTGCCCACGGGAACTG
TATCAGCTGTGGATCCTGAAGTCAACATGAATGTGACCGAGATAATCATGCGCTGGGGATATCCTGGTGA
GGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAAC
CATTTTGGCAAAGGTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGG
TCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAA
CAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTC
AGTTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAG
AACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAGGTTTCATAGCTTTTTCACAGATGCCTGA
GTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCG
CTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAGGACATGTTTGGACAGAAGCAATTTCTCCCTC
AGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAA
CGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGTCTAGAGTGGATGTGTATACAACA
CACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAGGTTTTTAAATACCGTAAGCTTC
AAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAGAGTTTTCCTCCCTCGTACAA
CATAAAAAACATGCGTCTACCCACTGCTTTGTGGAGCGGGGGCCGGGACTGGCTGGCAGACATCAATGAC
ATCACTATCTTACTGACTCAAATCCCCAAGTTGGTGTATCACAAGAACATTCCTGAGTGGGACCATCTGG
ATTTTATCTGGGGTTTGGATGCCCCCTGGAAACTGTATGATGAAATAATCAGTCTAATGAAGAAATACCA
GTGA

Translation (397 aa):
MQLQGLVFVFTIGILLSRVPTGTVSAVDPEVNMNVTEIIMRWGYPGEEHSVLTGDGYILSIHRIPRGRKN
HFGKGPRPVVYLQHGLLADSSNWVTNIDNSSLGFLLADAGFDVWMGNSRGNTWSLKHKTLSVSQDEFWAF
SFDEMAKYDLPASINYILNKTGQEQIYYVGHSQGCTIGFIAFSQMPELAKKIKMFLVLAPVLSLNFASGP
LLQLGRLPDPLLKDMFGQKQFLPQSAMLKWLSIHVCTHVIMKELCANVFFLLCGFNEKNLNMSRVDVYTT
HCPAGTSVQNMLHWGQVFKYRKLQAFDWGSSEKNYFHYNQSFPPSYNIKNMRLPTALWSGGRDWLADIND
ITILLTQIPKLVYHKNIPEWDHLDFIWGLDAPWKLYDEIISLMKKYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH