NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29756.1 Public Mus musculus 19 Stambpl1 23 108 98 CCDS HistoryNCBI Gene:76630Re-query CCDS DB by CCDS ID:29756.1Re-query CCDS DB by GeneID:76630See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29756.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054956.14 ENSMUSP00000059927.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054956.14Link to Ensembl Protein Viewer:ENSMUSP00000059927.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054956Re-query CCDS DB by Protein ID:ENSMUSP00000059927
Original member Current member EBI ENSMUST00000119603.1 ENSMUSP00000112938.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119603.1Link to Ensembl Protein Viewer:ENSMUSP00000112938.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119603Re-query CCDS DB by Protein ID:ENSMUSP00000112938
Original member Current member NCBI NM_001360716.1 NP_001347645.1 Accepted alive Link to Nucleotide Sequence:NM_001360716.1Link to Protein Sequence:NP_001347645.1Re-query CCDS DB by Nucleotide ID:NM_001360716Re-query CCDS DB by Protein ID:NP_001347645Link to BLAST:NP_001347645.1
Original member Current member NCBI NM_001360717.1 NP_001347646.1 Accepted alive Link to Nucleotide Sequence:NM_001360717.1Link to Protein Sequence:NP_001347646.1Re-query CCDS DB by Nucleotide ID:NM_001360717Re-query CCDS DB by Protein ID:NP_001347646Link to BLAST:NP_001347646.1
Original member Current member NCBI NM_001360718.1 NP_001347647.1 Accepted alive Link to Nucleotide Sequence:NM_001360718.1Link to Protein Sequence:NP_001347647.1Re-query CCDS DB by Nucleotide ID:NM_001360718Re-query CCDS DB by Protein ID:NP_001347647Link to BLAST:NP_001347647.1
Original member Current member NCBI NM_001360719.1 NP_001347648.1 Accepted alive Link to Nucleotide Sequence:NM_001360719.1Link to Protein Sequence:NP_001347648.1Re-query CCDS DB by Nucleotide ID:NM_001360719Re-query CCDS DB by Protein ID:NP_001347648Link to BLAST:NP_001347648.1
Original member Current member NCBI NM_029682.5 NP_083958.3 Accepted alive Link to Nucleotide Sequence:NM_029682.5Link to Protein Sequence:NP_083958.3Re-query CCDS DB by Nucleotide ID:NM_029682Re-query CCDS DB by Protein ID:NP_083958Link to BLAST:NP_083958.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347645.1 436 Q76N33-1 436 100% 0 0
NP_001347646.1 436 Q76N33-1 436 100% 0 0
NP_001347647.1 436 Q76N33-1 436 100% 0 0
NP_001347648.1 436 Q76N33-1 436 100% 0 0
NP_083958.3 436 Q76N33-1 436 100% 0 0

Chromosomal Locations for CCDS 29756.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34220237 34220266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34226542 34226759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34230093 34230168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34231431 34231526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34233961 34234318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34235210 34235334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34236276 34236413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34238776 34238888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34239503 34239602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34240017 34240073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGGAGCAGCCATTCACTGTGAATTCACTGAAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTC
TAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCAC
CCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAAC
CTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACGTTATTTGTAGAAAAACTTCCCAGCCACCGAG
ATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAGAAACTGAAGGAGATTGCGTTCCCAAG
GACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA
AACAAATATAAAGCCGAAATTCTCAAAAAGTTGGAACATCAGAGACTGATAGAGGCAGAGCGCCAGCGGA
TAGCTCAGATGCGCCAGCAGCAACTAGAGTCTGAACAGTTCCTGTTTTTTGAAGACCAACTCAAGAAGCA
GGAGTTGGCTCGAGGCCAGATTCGAGGTCAGGACTCTCCGGTGTTGTCTGAGCAGACTGACGGAAGTGCG
CTGTCCTGCTTTTCCACCCACCAGAGCAACTCTCTGAGGAACGCATTTGCAGATCACCCTCATAAAAGTG
ATGGAAGCAATTTCGCTAACTACTCTCCTCCCGTGAACAGGGCCCTAAAGCCAGCAGCCACCCTGAGTGC
TGTTCAGAATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTG
CTGCTGGCTGACTCTAACACAGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGAAAACTGACACACA
ATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAA
CGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCATACACACCCC
ACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGG
CCATTGCCATTGTGTGTTCCCCAAAGCATAAAGACACCGGCATTTTCAGGCTCACCAACGCTGGCATGCT
TGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGTATATGC
AGCCATGTGTTAGTAAAGGACATAAAAACAACTGTGTTGGATCTGAGGTGA

Translation (436 aa):
MEQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNISINEDITPRRYFRSGVEMERMASVYLEEGN
LENAFVLYNKFITLFVEKLPSHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKTDLLRKYNIEYQEYLQSK
NKYKAEILKKLEHQRLIEAERQRIAQMRQQQLESEQFLFFEDQLKKQELARGQIRGQDSPVLSEQTDGSA
LSCFSTHQSNSLRNAFADHPHKSDGSNFANYSPPVNRALKPAATLSAVQNLVVEGLRCVVLSRDLCHKFL
LLADSNTVRGIETCGILCGKLTHNEFTITHVVVPKQSAGPDYCDVENVEELFNVQDQHGLLTLGWIHTHP
TQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSTCKKKGFHPHTKDPKLFSIC
SHVLVKDIKTTVLDLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH