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Report for CCDS29318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29318.1 Public Mus musculus 18 Gnal 23 108 98 CCDS HistoryNCBI Gene:14680Re-query CCDS DB by CCDS ID:29318.1Re-query CCDS DB by GeneID:14680See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076605.8 ENSMUSP00000075908.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076605.8Link to Ensembl Protein Viewer:ENSMUSP00000075908.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000076605Re-query CCDS DB by Protein ID:ENSMUSP00000075908
Original member Current member EBI ENSMUST00000236771.1 ENSMUSP00000158245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236771.1Link to Ensembl Protein Viewer:ENSMUSP00000158245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236771Re-query CCDS DB by Protein ID:ENSMUSP00000158245
Original member Current member NCBI NM_010307.3 NP_034437.1 Accepted alive Link to Nucleotide Sequence:NM_010307.3Link to Protein Sequence:NP_034437.1Re-query CCDS DB by Nucleotide ID:NM_010307Re-query CCDS DB by Protein ID:NP_034437Link to BLAST:NP_034437.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034437.1 381 Q8CGK7 381 100% 0 0

Chromosomal Locations for CCDS 29318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67133826 67133970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67134213 67134285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67135312 67135366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67135519 67135638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67191370 67191467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67211048 67211102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67212225 67212298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67213072 67213130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67213488 67213608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67217070 67217200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67218504 67218571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67222569 67222715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGGGTGTTTGGGCAACAGCAGCAAGACCGCGGAAGATCAGGGCGTAGATGAAAAAGAACGCCGCGAGG
CC
AACAAAAAGATCGAGAAGCAGTTGCAGAAAGAGCGCCTGGCTTACAAAGCAACTCACCGCCTGCTGCT
T
CTGGGGGCTGGTGAGTCCGGGAAAAGCACTATCGTCAAACAGATGAGGATCCTGCACGTCAATGGCTTC
AAC
CCCGAGGAAAAGAAGCAGAAAATTCTGGACATCAGGAAAAATGTCAAAGATGCGATCGTGACAATCG
TT
TCAGCAATGAGTACTATCATACCTCCAGTTCCACTGGCCAACCCTGAGAACCAGTTCCGGTCAGATTA
T
ATCAAGAGCATAGCCCCTATCACTGACTTTGAATATTCCCAGGAGTTCTTTGACCATGTGAAGAAGCTG
TGG
GACGATGAAGGAGTGAAGGCCTGCTTTGAGAGATCCAACGAGTACCAGCTGATCGACTGTGCACAAT
A
C
TTCCTGGAAAGGATTGACAGTGTCAGTCTGGTTGACTACACACCCACAGACCAGGACCTGCTCAGATG
C
AGAGTGCTGACATCAGGAATCTTTGAGACACGATTCCAAGTGGACAAAGTGAACTTTCACATGTTTGAT
GTT
GGAGGCCAGAGAGATGAGAGAAGAAAATGGATCCAGTGTTTTAATGATGTCACTGCGATCATTTACG
TG
GCGGCCTGTAGTAGCTACAACATGGTGATCCGGGAAGATAACAATACCAACAGACTTCGGGAATCACT
G
GACCTGTTTGAAAGCATCTGGAATAACAGGTGGTTGCGAACCATTTCTATCATCCTATTCTTGAACAAA
CAA
GACATGCTGGCAGAAAAAGTCTTGGCAGGGAAGTCAAAAATCGAAGACTATTTCCCGGAGTATGCCA
AT
TATACTGTCCCTGAAGATGCAACACCAGATGCGGGAGAAGATCCCAAAGTTACAAGAGCAAAGTTCTT
T
ATCCGGGATCTGTTCTTGAGGATCAGCACAGCCACGGGTGATGGCAAACATTACTGCTACCCTCACTTC
ACC
TGCGCCGTGGACACAGAGAACATCCGCAGAGTGTTCAACGATTGCCGTGACATCATCCAGAGAATGC
AT
CTCAAGCAGTACGAACTCTTGTGA


Translation (381 aa):
MGCLGNSSKTAEDQGVDEKERREANKKIEKQLQKERLAYKATHRLLLLGAGESGKSTIVKQMRILHVNGF
N
P
EEKKQKILDIRKNVKDAIVTIVSAMSTIIPPVPLANPENQFRSDYIKSIAPITDFEYSQEFFDHVKKL
W
DDEGVKACFERSNEYQLIDCAQ
YFLERIDSVSLVDYTPTDQDLLRCRVLTSGIFETRFQVDKVNFHMFD
V
GGQRDERRKWIQCFN
DVTAIIYVAACSSYNMVIREDNNTNRLRESLDLFESIWNNRWLRTISIILFLNK
Q
DMLAEKVLAGKSKIEDYFPEYANYTVPED
ATPDAGEDPKVTRAKFFIRDLFLRISTATGDGKHYCYPHF
T
CAVDTENIRRVFNDCRDIIQRMHLKQYELL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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