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Report for CCDS28548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28548.1 Public Mus musculus 17 Arhgdig 23 108 98 CCDS HistoryNCBI Gene:14570Re-query CCDS DB by CCDS ID:28548.1Re-query CCDS DB by GeneID:14570See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025019.8 ENSMUSP00000025019.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025019.8Link to Ensembl Protein Viewer:ENSMUSP00000025019.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025019Re-query CCDS DB by Protein ID:ENSMUSP00000025019
Original member Current member NCBI NM_008113.3 NP_032139.1 Accepted alive Link to Nucleotide Sequence:NM_008113.3Link to Protein Sequence:NP_032139.1Re-query CCDS DB by Nucleotide ID:NM_008113Re-query CCDS DB by Protein ID:NP_032139Link to BLAST:NP_032139.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032139.1 225 Q62160 225 100% 0 0

Chromosomal Locations for CCDS 28548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26199330 26199529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26199613 26199676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26199752 26199828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26200015 26200098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26200191 26200370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26201071 26201143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGCTGGGCCTGGACGCGTGTGAGCTGGGGGAGCAGCTGTTGGAGCTGCTCCGGCTGGCGCTGTGCGCCC
GAGTCCTCTTGGCTGACAAGGATGGGGAGTCAACTCCATCAGATGAGGTGCTGGACGAAATTGTACCAGA
GTACCAGGCCCCTGGGAAGAAGAGCATGCTGGCAATCTGGCAACTGGACCCCGGGGACGTGAGCTTGGTC
AAGTACAAGCAGGCGCTGCTGGGACCCCTGCCACCCATTATGGACCCCAGCCTGCCCAACGTGCAGGTGA
CTAGGCTGACACTGCTGACGGAGCAGGCTCCAGGGCCTATCATCATGGACCTTACAGGAGACCTAGATGC
ACTGAAAAACCAGGTGTTTGTCCTGAAGGAGGGCATTGAATACAAGGTGAAGATCACCTTCAAGGTCAAC
AAGGAGATTGTCAGTGGCCTCAAATGTCTGCATCACACCTATCGTCGGGGACTGCGTGTGGACAAGGCCA
TCTTCATGGTGGGAAGCTACGGCCCCAGAGCCCAGGAGTATGAATTTGTGACTTCAGTGGAGGAAGCACC
AAGAGGAGCATTGGCACGTGGCCTCTACGTGGTCAGGTCCCTCTTCACTGATGACGACAGGCTGAACCAC
CTGTCCTGGGAGTGGCACCTCCATGTCTGCCAGGACTGGAAGGACTGA

Translation (225 aa):
MLGLDACELGEQLLELLRLALCARVLLADKDGESTPSDEVLDEIVPEYQAPGKKSMLAIWQLDPGDVSLV
KYKQALLGPLPPIMDPSLPNVQVTRLTLLTEQAPGPIIMDLTGDLDALKNQVFVLKEGIEYKVKITFKVN
KEIVSGLKCLHHTYRRGLRVDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRSLFTDDDRLNH
LSWEWHLHVCQDWKD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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