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Report for CCDS28417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28417.1 Public Mus musculus 17 Riok2 23 108 98 CCDS HistoryNCBI Gene:67045Re-query CCDS DB by CCDS ID:28417.1Re-query CCDS DB by GeneID:67045See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024620.7 ENSMUSP00000024620.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024620.7Link to Ensembl Protein Viewer:ENSMUSP00000024620.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024620Re-query CCDS DB by Protein ID:ENSMUSP00000024620
Original member Current member NCBI NM_025934.2 NP_080210.1 Accepted alive Link to Nucleotide Sequence:NM_025934.2Link to Protein Sequence:NP_080210.1Re-query CCDS DB by Nucleotide ID:NM_025934Re-query CCDS DB by Protein ID:NP_080210Link to BLAST:NP_080210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080210.1 547 Q9CQS5 547 100% 0 0

Chromosomal Locations for CCDS 28417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17374605 17374670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17377719 17377857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17378483 17378599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17380812 17380987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17383286 17383374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17384884 17385075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17385581 17385673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17387064 17387573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17389968 17390064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17393455 17393619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGGGGAAGGTGAATGTAGCCAAGCTTAGGTACATGAGCCGCGATGACTTCAGAGTTCTGACTGCGGTTG
AAATGGGCATGAAAAACCATGAGATTGTTCCCTGCAGTTTGATTGCTTCTATAGCCAGCCTGAAACATGG
TGGCTGTAATAAGATTCTAAGAGAATTGGTGAAGCATAAACTTATAGCGTGGGAACGTACTAAAACTGTG
CAGGGCTATCGGTTGACAAATGCTGGCTATGATTACCTAGCTCTGAAAACGCTGTCTTCTAGACAGGTAG
TTGAATCTGTTGGAAACCAGATGGGTGTGGGCAAAGAGTCAGACATTTACATTGTTGCCAATGAAGCCGG
GCAGCAGCTCGCACTGAAGCTCCACAGACTCGGAAGAACTTCCTTTCGAAATCTGAAAAACAAGCGCGAT
TACCACAAGCACAGGCACAATGTTTCTTGGCTTTACTTATCTCGGCTCTCGGCCATGAAGGAATTTGCCT
ATATGAAGGCATTATATGAGAGGAAATTTCCAGTTCCAAAGCCAATTGATTATAATCGCCATGCAGTGAT
CATGGAGCTTATTAATGGTTATCCCCTATGTCAGATACATCATGTTGAAGACCCTGCATCAGTATATGAT
GAAGCTATGGAACTGATAGTCAAACTGGGAAACCATGGACTGATTCATGGAGATTTCAATGAATTCAATC
TCATGTTGGACAAAGATGACCACATCACCATGATTGATTTTCCGCAGATGGTTTCCACATCCCACCCAAA
TGCTGAATGGTATTTTGACAGAGATGTTAAATGCATTCGAGAATTCTTCATGAAACGTTTTAGCTATGAA
AGTGAGCTCTACCCAACCTTCAGTGATATCAGGAAGGAGGATTCTCTTGATGTTGAGGTCTCTGCCAGTG
GTTACACAAAGGAAATGCAAGCAGATGATGAACTGCTACATCCAGTAGGCCCAGATGATAAAATTACTGA
AACAGAAGAGGACTCTGACTTCACGTTTTCTGATGAAGAAATGTTAGAAAAAGCCAAAGTGTGGAGGTCA
GAATTGGAAAAGGAAGCAGACCCAGCAGATGAATCAGGTGGATCCTGGTGCTGCTCGTCTACAGACAGCA
AACAAATAAAGGATGGCGGCTTACCAGAGGAGAGTGCTCATGTGTCCAGTTTCGAAGTGACGGCATTAAG
CCAAGCTGTAGAAGAGATGGAAAGGCAGGTTCTTCCCCACAGGTCGGTTACTGAGTTCTCTGAGGAGAGC
AGGAGAACTGAAAATGATGGGCAGCCAGGTCAGAGAAGCCCTGCTGGCTCTGAGGACTGTGACGATGAAC
CCCCCCATCTGATTGCCTTGTCATCAGTGAACAGGGAGTTCAGGCCTTTCAGAGACGAAGAGAGTATGAG
TAGTGTTACTCGGCATAGAACAAGAACATTGAGTGTTACGTCTGCGGGCAGTGCCCTAAGCTGTTCAACA
ATCCCTCCAGAACTGGTGAAGCAGAAGGTGAAGCGTCAGCTGACAAGGCAGCAGAAGGCGGCTGCCAGAC
GCCGGCTGCAGAAAGGAGAAGCCAATGTGTTTACCAAGCAGCGGAGGGAAAACATGCAGAATATTAAATC
GAGTTTGGAAGCAGCCAGCTTTTGGGGAGACTAA

Translation (547 aa):
MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPCSLIASIASLKHGGCNKILRELVKHKLIAWERTKTV
QGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEAGQQLALKLHRLGRTSFRNLKNKRD
YHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVIMELINGYPLCQIHHVEDPASVYD
EAMELIVKLGNHGLIHGDFNEFNLMLDKDDHITMIDFPQMVSTSHPNAEWYFDRDVKCIREFFMKRFSYE
SELYPTFSDIRKEDSLDVEVSASGYTKEMQADDELLHPVGPDDKITETEEDSDFTFSDEEMLEKAKVWRS
ELEKEADPADESGGSWCCSSTDSKQIKDGGLPEESAHVSSFEVTALSQAVEEMERQVLPHRSVTEFSEES
RRTENDGQPGQRSPAGSEDCDDEPPHLIALSSVNREFRPFRDEESMSSVTRHRTRTLSVTSAGSALSCST
IPPELVKQKVKRQLTRQQKAAARRRLQKGEANVFTKQRRENMQNIKSSLEAASFWGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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