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Report for CCDS28228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28228.1 Public Mus musculus 16 Tbc1d23 23 108 98 CCDS HistoryNCBI Gene:67581Re-query CCDS DB by CCDS ID:28228.1Re-query CCDS DB by GeneID:67581See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023431.7 ENSMUSP00000023431.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023431.7Link to Ensembl Protein Viewer:ENSMUSP00000023431.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023431Re-query CCDS DB by Protein ID:ENSMUSP00000023431
Original member Current member NCBI NM_026254.2 NP_080530.2 Accepted alive Link to Nucleotide Sequence:NM_026254.2Link to Protein Sequence:NP_080530.2Re-query CCDS DB by Nucleotide ID:NM_026254Re-query CCDS DB by Protein ID:NP_080530Link to BLAST:NP_080530.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080530.2 684 Q8K0F1-1 684 100% 0 0

Chromosomal Locations for CCDS 28228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57170359 57170440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57171623 57171817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57173024 57173159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57177932 57178020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57182851 57182990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57184380 57184486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57186638 57186680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57189262 57189432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57191474 57191566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57192609 57192731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57198281 57198384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57198724 57198770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57198859 57198983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57208204 57208327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57212371 57212575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57214164 57214269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57218309 57218420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57231314 57231366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGGCGGAAGGAGAAGAGCTTCTGCCACTGTCAACGTCGGGCGGGGACAGCTGGGAAAAAGATCTTGAAG
AAGCCCTTGAAGCAGGAGGTTGTGATCTTGAAACTTTGAGAAATATAATTCAAGGGAGGCCACTGCCTGC
TGAGCTGAGGGCCAAGGTTTGGAAGATTGCTCTGAACGTTGCAGGGAAAGGTGATAGTTTGGCATCATGG
GATGGTATTTTAGACTTGCCTGAGCAGAACACTATTCATAAAGATTGCCTTGAGTTTATCGAGCAGCTCT
CAGTGCCAGAGGAGAAGGCAGCAGAATTACTCCTGGATATTGAATCTGTAATTACTTTTTACTGTAAATC
ACGCAGCGTTAAATACAGCACATCCCTGAGCTGGATTCATCTACTGAAACCATTGATCTGTCTCCAGCTG
CCTCGCAGCGACCTATACAACTGCTTCTATGCCGTCATGAATAAGTACATTCCCAGGGATTGTTCCCTGA
AGGGGAGGCCATTTCATCTCTTCCGGTTGCTCATCCAGTACCACGAGCCTGAGCTTTGTTCTTTTCTTGA
CACAAAGAAAATCACTCCAGACTCCTATGCACTCAACTGGCTCGGGAGCCTTTTTGCACATTACTGTTCC
ACTGAGGTCACCCAGGCAATATGGGACGGATATCTACAGCAAGCGGACCCGTTTTTTATTTATTTCTTAA
TGTTAATTATCCTTGTTAATACAAAAGAAGTTATTTTAGCACAAGAGTCTGACAGCAAAGAAGAAGTTAT
CCGCTTTTTGGAAAGTACCCCGGCCAGCCTGAATCTGGAAGACATAGAAGACCTGTTCTCTTTGGCTCAG
TATTACTGTAGTAAGACGCCAGCTTCTTTTAGGAAGGATAACCATCATCTCTTCGGTAGCACCCTGCTGG
GGATCAAGGACGACGAGGCAGATCTGAGCCAGGCTCTGTGTCTGGCTGTTTCAGTATCAGAGATCCTTCA
AGCTAATCAGCTGCAAGGGGAAGGAGTCCGGTTCTTCGTGGTGGACTGCCGTCCTGCGGAGCAGTACAAT
GCTGGGCATTTGGCAACCGCGTTCCACCTAGACTCAGACTTGATGCTCCAGAATCCATCTGAGTTTGCAC
AGTCAGTAAAGTCCTTGCTAGAAGCACAGAAACAGTCCATTGAGTCTGGCTCCATAGCAGGCGGGGAGCA
CCTCTGTTTTATGGGCAGTGGCAGAGAGGAAGAAGACATGTACATGAACATGGTCCTCGCACACTTCTTA
CAGAAAAACAAAGAATATGTTAGCATTGCCAGTGGAGGATTTATGGCCCTTCAGCAGCACCTGGCAGACA
TAAATGTAGAGGGACCAGAAAGTGGATACGGCCATTGGATTGCCAGTACCTCAGGGTCAAGGGGCAGCAT
CAGCTCTGTCGATGGTGAATCCTGTAATGGCTCCAATGATAGAGGAATGAAATCCCTGGTCAGTAAAATG
ACTGTGGCTCTAAAGACAAAATCCGTTACCGTTAGGGAAAAGGTCATCAGCTTTATTGAGAACTCGTCGA
CTCCTGTGGACCGGCACGTGAGCAGCAGCGACAGAGTGGGCAAGCCTTACCGTGGAGTGAAGCCTGTGTT
CAGCATCGGCGATGAAGAGGAATATGACACAGATGAAATCGACAGCTCGTCCATGTCAGATGATGATAGG
AAAGAGGTTGTCAACATCCAGACCTGGATCAACAAGCCGGACATCAAGCATCACTTTCCCTGTAAAGAAG
TTAAAGAAAGTGGACATATGTTTCCTAGCCATCTGCTGGTTACCGCCACCCATATGTACTGCTTAAGGGA
GATTCTTTCAAGGAAAGGCCTGGCTTACATCCAGTCTCGGCAAGCACTAAATTCTGTAGTGAAAATTACG
TCCAAAAAAAAACATCCCGAGCTAATTACCTTCAAGTATGGAAACAGCAGTGCTTCCGGGATAGAAATCT
TGGCTATTGAAAGGTATTTGATTCCAAATGCAGGAGATGCTACCAGAGCCATAAAACAGCAGATCATGAA
AGTGTTGGATGCTTTGGAAAGTTAA

Translation (684 aa):
MAEGEELLPLSTSGGDSWEKDLEEALEAGGCDLETLRNIIQGRPLPAELRAKVWKIALNVAGKGDSLASW
DGILDLPEQNTIHKDCLEFIEQLSVPEEKAAELLLDIESVITFYCKSRSVKYSTSLSWIHLLKPLICLQL
PRSDLYNCFYAVMNKYIPRDCSLKGRPFHLFRLLIQYHEPELCSFLDTKKITPDSYALNWLGSLFAHYCS
TEVTQAIWDGYLQQADPFFIYFLMLIILVNTKEVILAQESDSKEEVIRFLESTPASLNLEDIEDLFSLAQ
YYCSKTPASFRKDNHHLFGSTLLGIKDDEADLSQALCLAVSVSEILQANQLQGEGVRFFVVDCRPAEQYN
AGHLATAFHLDSDLMLQNPSEFAQSVKSLLEAQKQSIESGSIAGGEHLCFMGSGREEEDMYMNMVLAHFL
QKNKEYVSIASGGFMALQQHLADINVEGPESGYGHWIASTSGSRGSISSVDGESCNGSNDRGMKSLVSKM
TVALKTKSVTVREKVISFIENSSTPVDRHVSSSDRVGKPYRGVKPVFSIGDEEEYDTDEIDSSSMSDDDR
KEVVNIQTWINKPDIKHHFPCKEVKESGHMFPSHLLVTATHMYCLREILSRKGLAYIQSRQALNSVVKIT
SKKKHPELITFKYGNSSASGIEILAIERYLIPNAGDATRAIKQQIMKVLDALES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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