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Report for CCDS28168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28168.1 Public Mus musculus 16 Cd80 23 108 98 CCDS HistoryNCBI Gene:12519Re-query CCDS DB by CCDS ID:28168.1Re-query CCDS DB by GeneID:12519See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 28168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099816.2 ENSMUSP00000097404.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099816.2Link to Ensembl Protein Viewer:ENSMUSP00000097404.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099816Re-query CCDS DB by Protein ID:ENSMUSP00000097404
Original member Current member EBI ENSMUST00000231716.1 ENSMUSP00000156031.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231716.1Link to Ensembl Protein Viewer:ENSMUSP00000156031.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231716Re-query CCDS DB by Protein ID:ENSMUSP00000156031
Original member Current member NCBI NM_001359898.1 NP_001346827.1 Accepted alive Link to Nucleotide Sequence:NM_001359898.1Link to Protein Sequence:NP_001346827.1Re-query CCDS DB by Nucleotide ID:NM_001359898Re-query CCDS DB by Protein ID:NP_001346827Link to BLAST:NP_001346827.1
Original member Current member NCBI NM_009855.2 NP_033985.3 Accepted alive Link to Nucleotide Sequence:NM_009855.2Link to Protein Sequence:NP_033985.3Re-query CCDS DB by Nucleotide ID:NM_009855Re-query CCDS DB by Protein ID:NP_033985Link to BLAST:NP_033985.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346827.1 306 Q00609-1 306 100% 0 0
NP_033985.3 306 Q00609-1 306 100% 0 0

Chromosomal Locations for CCDS 28168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38459181 38459289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38473866 38474183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38479064 38479345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38482620 38482733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38486304 38486401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCTTGCAATTGTCAGTTGATGCAGGATACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTC
TCTTTGTGCTGCTGATTCGTCTTTCACAAGTGTCTTCAGATGTTGATGAACAACTGTCCAAGTCAGTGAA
AGATAAGGTATTGCTGCCTTGCCGTTACAACTCTCCTCATGAAGATGAGTCTGAAGACCGAATCTACTGG
CAAAAACATGACAAAGTGGTGCTGTCTGTCATTGCTGGGAAACTAAAAGTGTGGCCCGAGTATAAGAACC
GGACTTTATATGACAACACTACCTACTCTCTTATCATCCTGGGCCTGGTCCTTTCAGACCGGGGCACATA
CAGCTGTGTCGTTCAAAAGAAGGAAAGAGGAACGTATGAAGTTAAACACTTGGCTTTAGTAAAGTTGTCC
ATCAAAGCTGACTTCTCTACCCCCAACATAACTGAGTCTGGAAACCCATCTGCAGACACTAAAAGGATTA
CCTGCTTTGCTTCCGGGGGTTTCCCAAAGCCTCGCTTCTCTTGGTTGGAAAATGGAAGAGAATTACCTGG
CATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGTACACCATTAGTAGCCAACTAGATTTCAAT
ACGACTCGCAACCACACCATTAAGTGTCTCATTAAATATGGAGATGCTCACGTGTCAGAGGACTTCACCT
GGGAAAAACCCCCAGAAGACCCTCCTGATAGCAAGAACACACTTGTGCTCTTTGGGGCAGGATTCGGCGC
AGTAATAACAGTCGTCGTCATCGTTGTCATCATCAAATGCTTCTGTAAGCACAGAAGCTGTTTCAGAAGA
AATGAGGCAAGCAGAGAAACAAACAACAGCCTTACCTTCGGGCCTGAAGAAGCATTAGCTGAACAGACCG
TCTTCCTTTAG

Translation (306 aa):
MACNCQLMQDTPLLKFPCPRLILLFVLLIRLSQVSSDVDEQLSKSVKDKVLLPCRYNSPHEDESEDRIYW
QKHDKVVLSVIAGKLKVWPEYKNRTLYDNTTYSLIILGLVLSDRGTYSCVVQKKERGTYEVKHLALVKLS
IKADFSTPNITESGNPSADTKRITCFASGGFPKPRFSWLENGRELPGINTTISQDPESELYTISSQLDFN
TTRNHTIKCLIKYGDAHVSEDFTWEKPPEDPPDSKNTLVLFGAGFGAVITVVVIVVIIKCFCKHRSCFRR
NEASRETNNSLTFGPEEALAEQTVFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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