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Report for CCDS28106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28106.1 Public Mus musculus 16 Bdh1 23 108 98 CCDS HistoryNCBI Gene:71911Re-query CCDS DB by CCDS ID:28106.1Re-query CCDS DB by GeneID:71911See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089759.8 ENSMUSP00000087192.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089759.8Link to Ensembl Protein Viewer:ENSMUSP00000087192.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000089759Re-query CCDS DB by Protein ID:ENSMUSP00000087192
Original member Current member EBI ENSMUST00000115226.7 ENSMUSP00000110881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115226.7Link to Ensembl Protein Viewer:ENSMUSP00000110881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115226Re-query CCDS DB by Protein ID:ENSMUSP00000110881
Original member Current member EBI ENSMUST00000115227.9 ENSMUSP00000110882.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115227.9Link to Ensembl Protein Viewer:ENSMUSP00000110882.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115227Re-query CCDS DB by Protein ID:ENSMUSP00000110882
Original member Current member NCBI NM_001122683.1 NP_001116155.1 Accepted alive Link to Nucleotide Sequence:NM_001122683.1Link to Protein Sequence:NP_001116155.1Re-query CCDS DB by Nucleotide ID:NM_001122683Re-query CCDS DB by Protein ID:NP_001116155Link to BLAST:NP_001116155.1
Original member Current member NCBI NM_175177.4 NP_780386.3 Accepted alive Link to Nucleotide Sequence:NM_175177.4Link to Protein Sequence:NP_780386.3Re-query CCDS DB by Nucleotide ID:NM_175177Re-query CCDS DB by Protein ID:NP_780386Link to BLAST:NP_780386.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116155.1 343 Q80XN0 343 100% 0 0
NP_780386.3 343 Q80XN0 343 100% 0 0

Chromosomal Locations for CCDS 28106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31438035 31438117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31446592 31446664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31447553 31447663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31449824 31449965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31455028 31455180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31456625 31457094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGCTAGCTGCCCGTCTCTCCAGACCCCTGTCACAGCTCCCAGGAAAAGCCCTAAGTGTCCGTGACAGAG
AA
AATGGGACAAGACACACACTGTTGTTTTATCCAGCATCCTTCAGCCCTGACACCCGTCGGACCTACGC
C
AGTCAGGCAGATGCGGCTAGTGGCAAAGCTATCCTGATCACAGGCTGTGACTCTGGATTTGGGTTCTCA
CTG
GCCAAGCATCTGCACTCAAAAGGCTTCCTTGTATTTGCTGGCTGTTTGATGAAGGACAAAGGTGATG
CT
GGGGTCAAGGAACTGGACAGCTTGAAGAGTGACCGACTGAGAACCATCCAGCTCAATGTCTGCAACAG
T
GAAGAGGTGGAGAAGGCGGTGGAGACGATCCGCTCCGGCCTGAAAGATCCTGAGAAGGGAATGTGGGGC
CTG
GTTAACAACGCAGGCATCTCAACGTTTGGGGAGGTGGAGTTCACCAGCATGGAGACATATAAGGAGG
TG
GCTGAAGTGAACCTCTGGGGAACCGTGCGCACCACAAAATCCTTCCTTCCCCTTCTCCGAAGAGCCAA
A
GGTCGCGTCGTTAACATCAGCAGCATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCCATACTGCATC
ACC
AAGTTTGGGATCGAGGCTTTCTCGGACTGCCTGCGCTATGAGATGCACCCTCTGGGTGTCAAGGTCA
GT
GTGGTGGAACCTGGCAACTTCATAGCGGCCACCAGTCTCTACAGCCCCGAGCGCATCCAGGCCATCGC
C
AAGAAGATGTGGGATGACCTGCCTGAGGTCGTCCGCAAGGACTATGGCAGGAAGTACTTCGATGAAAAG
ATT
GCCAAGATGGAAACCTACTGCAACAGCGGTTCCACAGATACTTCCTCTGTCATCAACGCTGTCACAC
AC
GCCTTGACCGCCGCCACCCCGTATACCCGCTACCATCCCATGGACTACTACTGGTGGCTTCGGATGCA
G
ATCATGACCCATTTTCCTGGAGCCATCTCTGACAAGATCTACATACACTGA


Translation (343 aa):
MLAARLSRPLSQLPGKALSVRDRENGTRHTLLFYPASFSPDTRRTYASQADAASGKAILITGCDSGFGFS
L
AKHLHSKGFLVFAGCLMK
DKGDAGVKELDSLKSDRLRTIQLNVCNSEEVEKAVETIRSGLKDPEKGMWG
L
VNNAGISTFGEVEFTSMETYKEVAEVNLWGTVRTTKSFLPLLRRAK
GRVVNISSMLGRMANPARSPYCI
T
KFGIEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIAKKMWDDLPEVVRKDYGRKYFDEK
I
AKMETYCNSGSTDTSSVINAVTHALTAATPYTRYHPMDYYWWLRMQIMTHFPGAISDKIYIH




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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