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Report for CCDS27782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27782.1 Public Mus musculus 15 Rpap3 23 108 98 CCDS HistoryNCBI Gene:71919Re-query CCDS DB by CCDS ID:27782.1Re-query CCDS DB by GeneID:71919See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023104.6 ENSMUSP00000023104.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023104.6Link to Ensembl Protein Viewer:ENSMUSP00000023104.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023104Re-query CCDS DB by Protein ID:ENSMUSP00000023104
Original member Current member NCBI NM_028003.2 NP_082279.1 Accepted alive Link to Nucleotide Sequence:NM_028003.2Link to Protein Sequence:NP_082279.1Re-query CCDS DB by Nucleotide ID:NM_028003Re-query CCDS DB by Protein ID:NP_082279Link to BLAST:NP_082279.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082279.1 660 Q9D706 660 100% 0 0

Chromosomal Locations for CCDS 27782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 97675294 97675379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97678386 97678486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97679070 97679167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97680335 97680521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97681619 97681839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97683827 97683925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97684033 97684103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97686442 97686563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97688111 97688238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97691182 97691310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97693214 97693284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97694104 97694225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97696498 97696625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97698916 97699038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97701068 97701211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97703202 97703354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGACTTCGGCGAGTAAGGCAGTTGAGTTGCAGCTCCAGGTGAAACACAACGCAGAGGAGCTGCAGGACT
TCATGAGGGACTTGGAGCACTGGGAGAAGGACATGAAGGAGAAGGACCTGGAGCTGAGAAGACAGGGTGG
CGTTGCCGAGGAGAATTTACCTCCTATTCGAAATGGGAATTTTAGAAAGAAGAAGAAGAAAGGCAAAGCT
AAAGAGTCTTCCAGAAAAACCAAAGAAGAAAACACGAAAAACAGAATAAAATCTTACGACTATGATGCCT
GGGCAAAACTTGATGTGGACAGGATTCTCGACGAGCTTGACAAAGAAGACAGCACCCACGATTCTCTGTC
CCAGGAGTCAGAGTCGGATGAAGATGGCATTCGTGTGGATTCCCAGAAAGCTCTTGTTCTAAAAGAAAAG
GGCAATAAGTACTTCAAGCAAGGAAAGTACGATGAAGCCATTGAATGCTACACGAAAGGCATGGATGCTG
ACCCCTACAATCCCGTGCTGCCAACAAACAGAGCGTCGGCTTACTTCAGACTGAAAAAGTTTGCTGTTGC
TGAGTCTGACTGTAACTTGGCCATCGCCTTGAGCAGGACTTACACCAAGGCGTACGCCAGGCGAGGTGCA
GCTCGGTTTGCTCTGCAGAAGTTAGAGGACGCCAGAAAAGATTATGAGAAAGTGTTAGAACTGGAGCCAG
ATAACTTTGAAGCAACAAATGAACTCAGGAAAATTAATCAGGCTTTGACGTCCAAGGAAAACTCGGGTCC
TGGAGCAGCTGCTGCTGCGGAGAGTAAGCCAGCTGCAGGGGAGAGCAAACCAACCGGTGGTCAGCAGGGC
AGGCAGAAGGCCATAGCGGAGAAAGACCTGGGCAACGGATTTTTCAAAGAGGGGAAATACGAGCAAGCAA
TTGAGTGCTACACCCGCGGGATAGCAGCGGACCGCACCAACGCCCTGCTGCCAGCTAACAGAGCGATGGC
CTATCTCAAGATTCAGAGATATGAAGAAGCTGAAAGAGACTGCACACAAGCTATCGTACTAGATGGCTCA
TACTCAAAAGCGTTTGCCAGAAGAGGAACAGCAAGGACATTTTTGGGAAAGATCAATGAGGCCAAGCAAG
ACTTTGAGACTGTTTTACTTCTGGAACCTGGAAATAAGCAAGCGGCGACCGAGCTTTCCAGAATCAAAAA
GGAACTAATAGAGAAAGGCCACTGGGATGATGTCTTCCTTGACTCCACACAGAGACACCATGTGGTGAAA
GCTGTGGATAATCCTCCTCGGGGCTCCCCTAAAGCACTCAAGAAGGTTTTTATTGAAGAAACTGGCAATT
TGATAGAGACTGTTGATGCACCAGATAGTTCTGCCACTGTCCCTGAGAGTGATCGAGCAACGGCAGCTGT
GGGCACTGGAACCAAGAAGAATCCAAGCGAGGGCGTCTCTCTGCCTGCAGGGGATAGGCCAAGAGCTAAA
GTGTTGAAAATAGAAGCAGTCAGTGACACTTCAGCCCCACAAGCACAGGTGGGGGTGAAGCAGGATGCGC
GTCAGCCTGGGAGTGAGAAGGCCTCCGTGAGGGCAGAGCAGATGCCGGGTCAGCTGGCCGCTGCTGGTCT
GCCTCCAGTTCCTGCCAACTCCTTCCAGCTCGAGTCTGATTTCAGACAGTTGAGAAGTTCCCCAGAGATG
CTGTATCAGTATGTAAAGAATATCGAACCATCTTTGTATCCGAAGTTGTTTCAGAAAAACCTAGATCCAG
ATGTATTCAATCAAATCATTAAGATTCTACACGACTTTTACATTGAGAGGGAAAAGCCAGCTCTCATCTT
TGAAGTCTTAGAACGACTTTCTCAGCTGAGAAGGTTTGACATGGCGGTGATGTTTATGTCAGGACCTGAG
AGAAAGCTTACAAATGTATTATTCAATCACTTAGAAAAATCAGACCTGAAGGAAGATTCTGTTGAAGAAC
TCAAGAAAAGATACGGCGGCTGA

Translation (660 aa):
MTSASKAVELQLQVKHNAEELQDFMRDLEHWEKDMKEKDLELRRQGGVAEENLPPIRNGNFRKKKKKGKA
KESSRKTKEENTKNRIKSYDYDAWAKLDVDRILDELDKEDSTHDSLSQESESDEDGIRVDSQKALVLKEK
GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGA
ARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENSGPGAAAAAESKPAAGESKPTGGQQG
RQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGS
YSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKGHWDDVFLDSTQRHHVVK
AVDNPPRGSPKALKKVFIEETGNLIETVDAPDSSATVPESDRATAAVGTGTKKNPSEGVSLPAGDRPRAK
VLKIEAVSDTSAPQAQVGVKQDARQPGSEKASVRAEQMPGQLAAAGLPPVPANSFQLESDFRQLRSSPEM
LYQYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFDMAVMFMSGPE
RKLTNVLFNHLEKSDLKEDSVEELKKRYGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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