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Report for CCDS27054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27054.1 Public Mus musculus 14 Sall2 23 108 98 CCDS HistoryNCBI Gene:50524Re-query CCDS DB by CCDS ID:27054.1Re-query CCDS DB by GeneID:50524See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27054.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058326.5 ENSMUSP00000056401.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058326.5Link to Ensembl Protein Viewer:ENSMUSP00000056401.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058326Re-query CCDS DB by Protein ID:ENSMUSP00000056401
Original member Current member NCBI NM_015772.3 NP_056587.2 Accepted alive Link to Nucleotide Sequence:NM_015772.3Link to Protein Sequence:NP_056587.2Re-query CCDS DB by Nucleotide ID:NM_015772Re-query CCDS DB by Protein ID:NP_056587Link to BLAST:NP_056587.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056587.2 1004 Q9QX96 1004 100% 0 0

Chromosomal Locations for CCDS 27054.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52312722 52315663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52328103 52328175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGTCTCGGCGAAAGCAACGGAGACCCCAACAGTTAATCTCGGACTGTGAAGGTCCCAGCGCATCTGAGA
ACGGTGATGCTAGCGAGGAAGACCACCCCCAAGTCTGTGCCAAATGCTGCGCACAATTCTCTGACCCGAC
CGAATTCCTCGCTCACCAGAACTCATGTTGCACTGACCCACCGGTAATGGTGATAATTGGAGGCCAGGAG
AATCCCAGCAACTCTTCAGCCTCCTCTGCGCCCCGACCAGAGGGCCACAGTAGGTCCCAGGTCATGGATA
CAGAGCACAGCAATCCCCCAGATTCTGGGTCCTCTGGGGCCCCGGATCCCACTTGGGGGCCAGAGCGGAG
GGGAGAGGAATCTTCTGGGCAATTCCTGGTCGCTGCCACAGGTACAGCGGCTGGGGGAGGTGGGGGCCTT
ATCTTGGCCAGTCCCAAGCTGGGAGCAACCCCATTACCTCCAGAATCCACTCCTGCACCCCCTCCTCCCC
CACCTCCCCCTCCCCCTCCAGGTGTAGGCAGTGGCCACTTGAACATTCCTCTGATCTTGGAAGAGTTGCG
GGTGCTGCAGCAGCGCCAGATTCACCAGATGCAGATGACTGAACAAATCTGCCGCCAGGTGCTGCTACTT
GGCTCCTTGGGGCAGACCGTGGGTGCCCCTGCCAGTCCCTCAGAGCTACCTGGGACAGGGGCTGCCTCTT
CCACCAAGCCCCTACTGCCTCTCTTCAGTCCCATCAAGCCAGCGCAAACTGGCAAGACACTGGCATCTTC
CTCTTCGTCATCCTCCTCCTCTGGAGCTGAACCGCCTAAGCAGGCTTTCTTCCACCTTTACCATCCACTG
GGATCACAGCATCCCTTCTCTGTAGGAGGGGTTGGGCGGAGCCACAAACCCACCCCTGCCCCTTCCCCTG
CGCTGCCAGGCAGTACGGATCAGCTGATTGCTTCACCTCATCTGGCATTCCCAGGCACCACCGGACTCCT
GGCAGCTCAGTGTCTTGGGGCAGCAAGGGGCCTTGAGGCTGCTGCCTCCCCAGGGCTCCTGAAGCCAAAG
AACGGAAGTGGTGAACTGGGCTATGGGGAAGTGATCAGTTCCTTGGAGAAACCCGGTGGAAGGCACAAAT
GCCGCTTTTGTGCAAAAGTATTCGGCAGTGACAGCGCCCTGCAGATCCACCTTCGTTCCCACACTGGTGA
GAGGCCCTATAAGTGCAACGTCTGTGGTAACCGTTTCACAACTCGGGGCAACCTCAAAGTACATTTTCAC
CGGCATCGTGAGAAGTACCCACATGTGCAAATGAATCCACATCCAGTACCGGAGCACCTAGACTACGTCA
TCACCAGCAGTGGGCTGCCTTACGGAATGTCTGTGCCACCAGAGAAAGCAGAAGAGGAGGCAGGCACACC
AGGCGGAGGTGTTGAACGCAAACCCCTAGTGGCCTCCACCACAGCACTCAGTGCCACAGAGAGCCTGACA
CTGCTCTCCACTGGCACAAGCACAGCAGTGGCTCCTGGGCTCCCTACTTTCAACAAGTTTGTGCTCATGA
AGGCAGTGGAACCCAAGAGTAAAGCGGATGAGAACACGCCCCCAGGGAGTGAGGGCTCCGCCATCGCTGG
AGTAGCAGACAGTGGCTCAGCAACCCGAATGCAGCTAAGTAAGCTGGTGACGTCACTACCGAGTTGGGCA
CTGCTTACTAATCACTTGAAGTCAACTGGAAGTTTCCCCTTCCCTTATGTGCTAGAACCCTTGGGGGCTT
CGCCTTCTGAGACCTCAAAGCTGCAGCAGCTAGTAGAAAAGATTGACCGCCAAGGAGCTGTGGCGGTGGC
ATCTACTGCCTCGGGAGCTCCCACCACTTCTGCCCCTGCACCTTCCTCCTCCGCTTCTGGACCTAACCAG
TGTGTGATCTGTCTTCGGGTCCTGAGCTGCCCTCGGGCTCTACGCCTGCATTATGGCCAACATGGAGGTG
AGCGGCCCTTCAAGTGTAAAGTGTGTGGCCGAGCTTTCTCCACAAGGGGCAATTTGCGCGCACATTTCGT
GGGTCACAAGACCAGTCCAGCTGCCCGGGCTCAGAACTCCTGCCCCATTTGTCAGAAGAAGTTCACTAAT
GCTGTCACTCTGCAGCAACATGTTCGGATGCACCTGGGGGGCCAGATCCCCAATGGGGGTTCCGCACTTT
CTGAAGGTGGGGGAGCTGCCCAGGAAAACAGCTCTGAGCAGTCTACAGCCTCTGGACCAGGGAGTTTCCC
CCAGCCGCAGTCCCAGCAGCCATCTCCAGAAGAGGAGATGTCTGAGGAAGAGGAAGAGGATGAGGAAGAG
GAGGAAGACGTGACAGATGAAGATTCCCTAGCAGGAAGAGGCTCTGAGAGTGGGGGAGAGAAGGCCATAT
CAGTACGAGGTGACTCAGAAGAGGTATCTGGGGCAGAGGAAGAAGTGGCAACATCAGTAGCAGCACCCAC
CACTGTGAAGGAGATGGACAGTAATGAGAAAGCCCCTCAACACACTCTGCCGCCACCTCCGCCACCACCC
GACAACCTGGATCATCCCCAACCCATGGAGCAGGGAACCAGTGATGTTTCCGGAGCCATGGAGGAAGAAG
CCAAACTGGAGGGAACCTCAAGCCCGATGGCAGCCCTCACCCAAGAAGGGGAGGGCACCAGCACCCCTTT
GGTGGAAGAGCTGAACTTACCGGAAGCCATGAAGAAGGATCCAGGAGAGAGCAGCGGCAGGAAGGCCTGT
GAAGTATGTGGCCAGAGCTTTCCTACCCAGACAGCTCTGGAGGAGCATCAGAAGACCCATCCCAAGGATG
GGCCACTCTTCACTTGTGTCTTCTGCAGGCAGGGCTTCCTTGACCGTGCTACCCTCAAGAAGCACATGCT
GTTGGCTCACCACCAGGTACCGCCCTTTGCACCCCATGGCCCTCAGAATATTGCTACTCTTTCCTTGGTC
CCTGGCTGTTCCTCCTCCATCCCTTCTCCAGGGCTCTCCCCATTCCCTCGAAAAGATGACCCCACCATGC
CATGA

Translation (1004 aa):
MSRRKQRRPQQLISDCEGPSASENGDASEEDHPQVCAKCCAQFSDPTEFLAHQNSCCTDPPVMVIIGGQE
NPSNSSASSAPRPEGHSRSQVMDTEHSNPPDSGSSGAPDPTWGPERRGEESSGQFLVAATGTAAGGGGGL
ILASPKLGATPLPPESTPAPPPPPPPPPPPGVGSGHLNIPLILEELRVLQQRQIHQMQMTEQICRQVLLL
GSLGQTVGAPASPSELPGTGAASSTKPLLPLFSPIKPAQTGKTLASSSSSSSSSGAEPPKQAFFHLYHPL
GSQHPFSVGGVGRSHKPTPAPSPALPGSTDQLIASPHLAFPGTTGLLAAQCLGAARGLEAAASPGLLKPK
NGSGELGYGEVISSLEKPGGRHKCRFCAKVFGSDSALQIHLRSHTGERPYKCNVCGNRFTTRGNLKVHFH
RHREKYPHVQMNPHPVPEHLDYVITSSGLPYGMSVPPEKAEEEAGTPGGGVERKPLVASTTALSATESLT
LLSTGTSTAVAPGLPTFNKFVLMKAVEPKSKADENTPPGSEGSAIAGVADSGSATRMQLSKLVTSLPSWA
LLTNHLKSTGSFPFPYVLEPLGASPSETSKLQQLVEKIDRQGAVAVASTASGAPTTSAPAPSSSASGPNQ
CVICLRVLSCPRALRLHYGQHGGERPFKCKVCGRAFSTRGNLRAHFVGHKTSPAARAQNSCPICQKKFTN
AVTLQQHVRMHLGGQIPNGGSALSEGGGAAQENSSEQSTASGPGSFPQPQSQQPSPEEEMSEEEEEDEEE
EEDVTDEDSLAGRGSESGGEKAISVRGDSEEVSGAEEEVATSVAAPTTVKEMDSNEKAPQHTLPPPPPPP
DNLDHPQPMEQGTSDVSGAMEEEAKLEGTSSPMAALTQEGEGTSTPLVEELNLPEAMKKDPGESSGRKAC
EVCGQSFPTQTALEEHQKTHPKDGPLFTCVFCRQGFLDRATLKKHMLLAHHQVPPFAPHGPQNIATLSLV
PGCSSSIPSPGLSPFPRKDDPTMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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