NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26943.1 Public Mus musculus 14 Opn4 23 108 98 CCDS HistoryNCBI Gene:30044Re-query CCDS DB by CCDS ID:26943.1Re-query CCDS DB by GeneID:30044See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022331.2 ENSMUSP00000022331.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022331.2Link to Ensembl Protein Viewer:ENSMUSP00000022331.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000022331Re-query CCDS DB by Protein ID:ENSMUSP00000022331
Original member Current member NCBI NM_013887.2 NP_038915.1 Accepted alive Link to Nucleotide Sequence:NM_013887.2Link to Protein Sequence:NP_038915.1Re-query CCDS DB by Nucleotide ID:NM_013887Re-query CCDS DB by Protein ID:NP_038915Link to BLAST:NP_038915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038915.1 521 Q9QXZ9-1 521 100% 0 0

Chromosomal Locations for CCDS 26943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34592749 34593069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34593830 34594010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34594767 34594874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34595720 34595878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34596232 34596403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34597002 34597205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34597360 34597493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34598815 34598960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34599818 34599958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGACTCTCCTTCAGGACCAAGAGTCTTGTCAAGCTTAACTCAGGATCCCAGCTTCACAACCAGTCCTG
CCCTGCAAGGCATTTGGAACGGCACTCAGAACGTCTCCGTAAGAGCCCAGCTTCTCTCTGTTAGCCCCAC
GACATCTGCACATCAGGCTGCTGCCTGGGTCCCCTTCCCCACAGTCGATGTCCCAGACCATGCTCACTAT
ACCCTAGGCACGGTGATCCTGCTGGTGGGACTCACAGGGATGCTGGGCAATCTGACGGTCATCTACACCT
TCTGCAGGAACAGAGGCCTGCGGACACCAGCAAACATGTTCATCATCAACCTCGCAGTCAGCGACTTCCT
CATGTCAGTCACTCAGGCCCCGGTCTTCTTTGCCAGCAGCCTCTACAAGAAGTGGCTCTTTGGGGAGACA
GGTTGCGAGTTCTATGCCTTCTGCGGGGCTGTCTTTGGCATCACTTCCATGATCACCCTGACAGCCATAG
CCATGGACCGCTATCTGGTGATCACACGTCCACTGGCCACCATCGGCAGGGGATCCAAAAGACGAACGGC
ACTCGTCCTGCTAGGCGTCTGGCTTTATGCCCTGGCCTGGAGTCTGCCACCTTTCTTTGGTTGGAGTGCC
TACGTGCCCGAGGGGCTGCTGACATCCTGCTCCTGGGACTACATGACCTTCACACCCCAGGTGCGTGCCT
ACACCATGCTGCTCTTCTGCTTTGTCTTCTTCCTCCCCCTGCTCATCATCATCTTCTGCTACATCTTCAT
CTTCAGGGCCATCCGAGAGACAGGCCGGGCCTGTGAGGGCTGCGGTGAGTCCCCTCTGCGGCAGAGGCGG
CAGTGGCAGCGGCTGCAGAGTGAGTGGAAGATGGCCAAGGTCGCACTGATTGTCATTCTTCTCTTCGTGC
TGTCCTGGGCTCCCTACTCCACTGTGGCTCTGGTGGCCTTTGCTGGATACTCGCACATCCTGACGCCCTA
CATGAGCTCGGTGCCAGCCGTCATCGCCAAGGCTTCTGCCATCCACAATCCCATTATCTACGCCATCACT
CACCCCAAGTACAGGGTGGCCATTGCCCAGCACCTGCCTTGCCTTGGGGTGCTTCTCGGTGTATCAGGCC
AGCGCAGCCACCCCTCCCTCAGCTACCGCTCTACCCACCGCTCCACATTGAGCAGCCAGTCCTCAGACCT
CAGCTGGATCTCTGGACGGAAGCGTCAAGAGTCCCTGGGTTCTGAGAGTGAAGTGGGCTGGACAGACACA
GAAACAACCGCTGCATGGGGAGCTGCCCAGCAAGCAAGTGGACAGTCCTTCTGCAGTCAGAACCTAGAAG
ATGGAGAACTCAAGGCCTCTTCCAGCCCCCAGGTACAGAGATCTAAGACTCCCAAGGTGCCTGGACCCAG
TACCTGCCGCCCTATGAAAGGACAGGGAGCCAGGCCAAGTAGCCTAAGGGGTGACCAGAAAGGCAGGCTT
GCTGTGTGCACAGGCCTCTCAGAGTGTCCCCATCCCCATACATCCCAGTTTCCCCTTGCTTTCCTAGAGG
ATGATGTGACTCTCAGACATCTGTAG

Translation (521 aa):
MDSPSGPRVLSSLTQDPSFTTSPALQGIWNGTQNVSVRAQLLSVSPTTSAHQAAAWVPFPTVDVPDHAHY
TLGTVILLVGLTGMLGNLTVIYTFCRNRGLRTPANMFIINLAVSDFLMSVTQAPVFFASSLYKKWLFGET
GCEFYAFCGAVFGITSMITLTAIAMDRYLVITRPLATIGRGSKRRTALVLLGVWLYALAWSLPPFFGWSA
YVPEGLLTSCSWDYMTFTPQVRAYTMLLFCFVFFLPLLIIIFCYIFIFRAIRETGRACEGCGESPLRQRR
QWQRLQSEWKMAKVALIVILLFVLSWAPYSTVALVAFAGYSHILTPYMSSVPAVIAKASAIHNPIIYAIT
HPKYRVAIAQHLPCLGVLLGVSGQRSHPSLSYRSTHRSTLSSQSSDLSWISGRKRQESLGSESEVGWTDT
ETTAAWGAAQQASGQSFCSQNLEDGELKASSSPQVQRSKTPKVPGPSTCRPMKGQGARPSSLRGDQKGRL
AVCTGLSECPHPHTSQFPLAFLEDDVTLRHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH