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Report for CCDS2676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2676.1 Public Homo sapiens 3 SLC22A13 24 110 108 CCDS HistoryNCBI Gene:9390Re-query CCDS DB by CCDS ID:2676.1Re-query CCDS DB by GeneID:9390See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311856.9 ENSP00000310241.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311856.9Link to Ensembl Protein Viewer:ENSP00000310241.3Re-query CCDS DB by Nucleotide ID:ENST00000311856Re-query CCDS DB by Protein ID:ENSP00000310241
Original member Current member NCBI NM_004256.4 NP_004247.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004256.4Link to Protein Sequence:NP_004247.2Re-query CCDS DB by Nucleotide ID:NM_004256Re-query CCDS DB by Protein ID:NP_004247Link to BLAST:NP_004247.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004247.2 551 Q9Y226-1 551 100% 0 0

Chromosomal Locations for CCDS 2676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 38265861 38266238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38274272 38274375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38274604 38274758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38274989 38275157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38275370 38275490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38275578 38275672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38275882 38276096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38276287 38276395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38276912 38277127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38277372 38277465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGCTCAGTTTGTCCAGGTCCTGGCTGAAATAGGTGACTTTGGTCGCTTCCAGATACAGCTATTGATCC
TGCTGTGTGTTCTCAACTTCCTGTCTCCCTTCTACTTTTTTGCCCATGTCTTCATGGTCCTAGATGAGCC
CCACCACTGTGCAGTGGCTTGGGTGAAGAACCACACTTTCAACCTGAGTGCTGCTGAACAGCTGGTACTG
AGCGTGCCCCTGGACACTGCAGGTCACCCAGAGCCCTGCCTCATGTTCCGGCCACCCCCCGCCAATGCCA
GCCTGCAGGACATCCTCAGCCACCGCTTCAATGAGACGCAGCCTTGTGATATGGGCTGGGAATATCCTGA
GAACAGGCTCCCATCCCTGAAGAATGAGTTCAACCTGGTTTGTGATCGGAAGCACCTGAAGGACACCACA
CAGTCAGTGTTCATGGCTGGGCTCCTTGTTGGCACCCTCATGTTTGGGCCCCTCTGCGACCGGATTGGCC
GCAAGGCCACAATCCTGGCGCAGCTGCTCCTCTTCACCCTCATCGGCCTGGCCACAGCTTTTGTGCCCAG
CTTTGAGCTCTACATGGCCCTGCGCTTTGCTGTGGCTACTGCCGTCGCTGGACTTAGCTTCAGCAATGTC
ACCCTACTGACAGAATGGGTGGGGCCCTCATGGAGGACGCAGGCCGTGGTCCTGGCCCAGTGCAACTTCT
CCCTCGGGCAGATGGTGCTTGCGGGACTCGCCTACGGTTTCCGCAACTGGAGGCTCCTTCAGATCACCGG
CACTGCGCCTGGCTTACTGCTCTTCTTCTACTTCTGGGCTCTGCCAGAATCTGCACGTTGGCTCCTGACC
CGTGGGAGGATGGACGAGGCGATACAACTGATCCAGAAGGCGGCCTCGGTCAATAGGCGGAAACTCTCCC
CGGAGCTCATGAACCAGCTGGTCCCAGAGAAGACAGGCCCCTCAGGGAATGCCCTGGATCTGTTCAGACA
CCCCCAGCTCCGGAAGGTGACCCTGATTATCTTCTGTGTCTGGTTTGTGGACAGTCTGGGGTACTACGGC
CTGAGCCTCCAAGTGGGGGACTTCGGCCTGGACGTCTATCTGACGCAGCTCATCTTTGGAGCTGTTGAGG
TGCCTGCCCGCTGTTCCAGCATCTTCATGATGCAGAGGTTTGGCCGCAAGTGGAGCCAGTTGGGGACCTT
GGTCTTGGGTGGCCTGATGTGTATCATCATCATCTTCATCCCAGCAGATCTGCCCGTGGTGGTCACCATG
CTGGCTGTGGTGGGGAAGATGGCCACAGCTGCTGCCTTTACCATCTCCTATGTGTACTCTGCCGAGCTTT
TCCCCACCATCCTCCGGCAGACAGGCATGGGGCTGGTGGGCATCTTCTCACGGATCGGGGGCATCCTCAC
ACCACTTGTGATCCTGCTGGGAGAGTACCACGCTGCCCTCCCCATGCTCATCTACGGCAGCCTCCCCATC
GTGGCCGGCCTGCTGTGCACCCTGCTGCCAGAGACGCATGGCCAGGGCCTGAAAGACACCCTCCAGGACC
TGGAGCTGGGGCCTCACCCACGGTCCCCCAAATCAGTGCCCTCAGAGAAGGAAACAGAGGCCAAGGGAAG
AACTTCCAGCCCGGGAGTGGCCTTTGTGAGCAGCACATACTTCTGA

Translation (551 aa):
MAQFVQVLAEIGDFGRFQIQLLILLCVLNFLSPFYFFAHVFMVLDEPHHCAVAWVKNHTFNLSAAEQLVL
SVPLDTAGHPEPCLMFRPPPANASLQDILSHRFNETQPCDMGWEYPENRLPSLKNEFNLVCDRKHLKDTT
QSVFMAGLLVGTLMFGPLCDRIGRKATILAQLLLFTLIGLATAFVPSFELYMALRFAVATAVAGLSFSNV
TLLTEWVGPSWRTQAVVLAQCNFSLGQMVLAGLAYGFRNWRLLQITGTAPGLLLFFYFWALPESARWLLT
RGRMDEAIQLIQKAASVNRRKLSPELMNQLVPEKTGPSGNALDLFRHPQLRKVTLIIFCVWFVDSLGYYG
LSLQVGDFGLDVYLTQLIFGAVEVPARCSSIFMMQRFGRKWSQLGTLVLGGLMCIIIIFIPADLPVVVTM
LAVVGKMATAAAFTISYVYSAELFPTILRQTGMGLVGIFSRIGGILTPLVILLGEYHAALPMLIYGSLPI
VAGLLCTLLPETHGQGLKDTLQDLELGPHPRSPKSVPSEKETEAKGRTSSPGVAFVSSTYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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