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Report for CCDS26246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26246.1 Public Mus musculus 13 B3galnt2 23 108 98 CCDS HistoryNCBI Gene:97884Re-query CCDS DB by CCDS ID:26246.1Re-query CCDS DB by GeneID:97884See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099747.4 ENSMUSP00000097336.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099747.4Link to Ensembl Protein Viewer:ENSMUSP00000097336.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099747Re-query CCDS DB by Protein ID:ENSMUSP00000097336
Original member Current member EBI ENSMUST00000221974.1 ENSMUSP00000152397.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221974.1Link to Ensembl Protein Viewer:ENSMUSP00000152397.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221974Re-query CCDS DB by Protein ID:ENSMUSP00000152397
Original member Current member EBI ENSMUST00000221300.1 ENSMUSP00000152755.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221300.1Link to Ensembl Protein Viewer:ENSMUSP00000152755.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221300Re-query CCDS DB by Protein ID:ENSMUSP00000152755
Original member Current member NCBI NM_001362404.1 NP_001349333.1 Accepted alive Link to Nucleotide Sequence:NM_001362404.1Link to Protein Sequence:NP_001349333.1Re-query CCDS DB by Nucleotide ID:NM_001362404Re-query CCDS DB by Protein ID:NP_001349333Link to BLAST:NP_001349333.1
Original member Current member NCBI NM_001362405.1 NP_001349334.1 Accepted alive Link to Nucleotide Sequence:NM_001362405.1Link to Protein Sequence:NP_001349334.1Re-query CCDS DB by Nucleotide ID:NM_001362405Re-query CCDS DB by Protein ID:NP_001349334Link to BLAST:NP_001349334.1
Original member Current member NCBI NM_178640.3 NP_848755.1 Accepted alive Link to Nucleotide Sequence:NM_178640.3Link to Protein Sequence:NP_848755.1Re-query CCDS DB by Nucleotide ID:NM_178640Re-query CCDS DB by Protein ID:NP_848755Link to BLAST:NP_848755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349333.1 504 Q8BG28-1 504 100% 0 0
NP_001349334.1 504 Q8BG28-1 504 100% 0 0
NP_848755.1 504 Q8BG28-1 504 100% 0 0

Chromosomal Locations for CCDS 26246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 13954805 13954919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13966310 13966457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13970767 13970867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13975438 13975634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13980601 13980696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13987353 13987463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13990789 13990867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13991369 13991552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13994415 13994540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13995116 13995275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13995727 13995783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13996893 13997033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCGAAACTGGCTGGTGCTGCTGTGCCCTTGCGTGCTCGGGGCCGCGCTGCACCTCTGGCACCTCTGGC
TCCGTTCCCCGCCGGACCCCCACAACACCGGGCCCAGCGCGGCAGATCAATCAGCCTTATTTCCTCACTG
GAAATTTAGCCACTATGATGTGGTAGTTGGTGTGTTATCAGCTCGAAATAACCACGAACTTCGAAATGTG
ATAAGGAACACCTGGCTGAAGAATTTGCTGCATCATCCTACATTAAGTCAACGTGTGCTTGTGAAGTTCA
TAATAGGTGCCCGTGGCTGTGAAGTGCCTGTGGAAGACAGGGAGGATCCTTACTCCTGCCGACTGCTCAA
CATCACCAATCCAGTTTTGAATCAAGAAATTGAGGCATTCAGCTTTCCTGAAGATGCCTCCTCATCTAGA
CTCTCTGAAGACCGAGTTGTCAGCGTGAGCTTCAGAGTTCTCTACCCAATCGTGATTACCAGTCTTGGAG
TGTTCTACGATGCCAGTGATGTTGGTTTTCAAAGGAACATCACAGTCAAGTTGTATCAGACAGAGCAGGA
GGAGGCCCTTTTCATCGCCCGATTCAGTCCTCCAAGTTGTGGCGTACAAGTGAACAAGCTCTGGTATAAG
CCCGTGGAACAGTTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTGGGAAAGCCAAGATCTCCATG
GCCTCGTGTCCAGAAACCTGCACAGAGTGACAGTGAATGATGGAGGGGGTGTTCTCAGAGTCCTTGCAGC
TGGGGAAGGGGCACTGCCTCATGAATTCATGGAAGGTGTGGAGGGAGTTGCGGGTGGCTTTATCTACACT
GTTCAGGAAGGTGATGCACTATTAAGAAGCCTTTATTCTCGGCCCCAGAGACTTGCAGATCACATACAGG
ATCTGCAGGTGGAAGATGCCTTACTGCAGGAGGAAAGCAGTGTCCATGACGACATTGTCTTCGTGGATGT
TGTGGATACTTACCGGAATGTTCCTGCAAAATTACTGAACTTCTATAGATGGACTGTGGAATCCACCAGC
TTCGATTTGCTGCTCAAGACAGATGACGACTGTTATATAGACTTAGAAGCTGTGTTTAATAGAATTGCTC
AGAAGAATCTAGATGGGCCTAATTTTTGGTGGGGAAATTTCAGGTTGAATTGGGCAGTGGACAGAACCGG
AAAATGGCAGGAGCTGGAATACCCGAGCCCGGCTTACCCTGCCTTTGCATGTGGGTCAGGGTATGTGATC
TCCAAGGATATCGTTGACTGGCTGGCAGGCAACTCCAGAAGGTTAAAGACCTATCAGGGTGAAGATGTCA
GCATGGGCATTTGGATGGCAGCCATAGGACCTAAAAGACACCAGGACAGCCTGTGGCTGTGTGAGAAAAC
CTGTGAGACAGGAATGCTGTCTTCTCCTCAGTACTCACCAGAAGAGCTGAGCAAACTCTGGGAACTGAAG
GAGCTGTGTGGGGATCCTTGTCAGTGTGAAGCAAAAGTACGATGA

Translation (504 aa):
MRNWLVLLCPCVLGAALHLWHLWLRSPPDPHNTGPSAADQSALFPHWKFSHYDVVVGVLSARNNHELRNV
IRNTWLKNLLHHPTLSQRVLVKFIIGARGCEVPVEDREDPYSCRLLNITNPVLNQEIEAFSFPEDASSSR
LSEDRVVSVSFRVLYPIVITSLGVFYDASDVGFQRNITVKLYQTEQEEALFIARFSPPSCGVQVNKLWYK
PVEQFILPESFEGTIVWESQDLHGLVSRNLHRVTVNDGGGVLRVLAAGEGALPHEFMEGVEGVAGGFIYT
VQEGDALLRSLYSRPQRLADHIQDLQVEDALLQEESSVHDDIVFVDVVDTYRNVPAKLLNFYRWTVESTS
FDLLLKTDDDCYIDLEAVFNRIAQKNLDGPNFWWGNFRLNWAVDRTGKWQELEYPSPAYPAFACGSGYVI
SKDIVDWLAGNSRRLKTYQGEDVSMGIWMAAIGPKRHQDSLWLCEKTCETGMLSSPQYSPEELSKLWELK
ELCGDPCQCEAKVR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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