NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25896.1 Public Mus musculus 12 Lrrn3 23 108 98 CCDS HistoryNCBI Gene:16981Re-query CCDS DB by CCDS ID:25896.1Re-query CCDS DB by GeneID:16981See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043884.5 ENSMUSP00000043818.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043884.5Link to Ensembl Protein Viewer:ENSMUSP00000043818.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043884Re-query CCDS DB by Protein ID:ENSMUSP00000043818
Original member Current member NCBI NM_001271708.1 NP_001258637.1 Accepted alive Link to Nucleotide Sequence:NM_001271708.1Link to Protein Sequence:NP_001258637.1Re-query CCDS DB by Nucleotide ID:NM_001271708Re-query CCDS DB by Protein ID:NP_001258637Link to BLAST:NP_001258637.1
Original member Current member NCBI NM_001271709.1 NP_001258638.1 Accepted alive Link to Nucleotide Sequence:NM_001271709.1Link to Protein Sequence:NP_001258638.1Re-query CCDS DB by Nucleotide ID:NM_001271709Re-query CCDS DB by Protein ID:NP_001258638Link to BLAST:NP_001258638.1
Original member Current member NCBI NM_010733.3 NP_034863.1 Accepted alive Link to Nucleotide Sequence:NM_010733.3Link to Protein Sequence:NP_034863.1Re-query CCDS DB by Nucleotide ID:NM_010733Re-query CCDS DB by Protein ID:NP_034863Link to BLAST:NP_034863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258637.1 707 Q8CBC6 707 100% 0 0
NP_001258638.1 707 Q8CBC6 707 100% 0 0
NP_034863.1 707 Q8CBC6 707 100% 0 0

Chromosomal Locations for CCDS 25896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 41452193 41454316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGAAGGACACGCCACTCCAAGTCCATGTGCTACTTGGCCTAGCTATCACTACACTAGTACAAGCTATAG
ATAAAAAAGTGGATTGCCCCCAATTATGTACCTGTGAGATCAGGCCTTGGTTTACCCCGAGATCCATCTA
TATGGAAGCATCGACAGTGGACTGTAATGATTTAGGGCTTTTAAACTTCCCAGCCAGATTGCCTGCCGAC
ACACAGATTCTGCTCCTACAGACTAACAATATTGCAAGAATTGAACATTCCACAGACTTCCCAGTGAACC
TGACTGGCCTGGACTTATCTCAAAACAATTTATCTTCAGTCACTAATATTAATGTACAAAAGATGTCTCA
GCTTCTTTCTGTGTACCTAGAGGAAAACAAGCTAACTGAGCTGCCGGAAAAGTGTCTATATGGACTGAGC
AACTTGCAGGAACTCTACGTTAATCACAACCTGCTCTCTACCATTTCTCCCGGAGCCTTCATTGGCCTAC
ATAATCTTCTCCGGCTTCATCTCAACTCAAACAGACTGCAGATGATCAACAGTCAATGGTTTGATGCTCT
TCCCAATCTCGAGATTCTGATGCTTGGGGACAACCCCATCATCAGGATCAAGGACATGAACTTTCAGCCT
CTTGTCAAGCTTCGCAGCCTGGTTATAGCTGGCATAAACCTCACGGAAATACCAGACGACGCCTTGGCTG
GCCTGGAGAACCTAGAAAGCATCTCCTTTTATGATAACAGGCTCAGTAAGGTTCCCCAGGTTGCACTTCA
AAAAGCCGTTAACCTCAAGTTTTTGGATCTAAATAAAAATCCTATTAACAGAATACGGAGGGGTGATTTT
AGCAATATGCTACATTTGAAGGAATTGGGGATAAACAATATGCCTGAACTTGTCTCCATTGACAGTCTCG
CTGTGGATAACTTGCCAGATTTGAGAAAAATAGAAGCTACTAACAACCCCAGATTGTCTTACATTCACCC
TAATGCATTTTTCAGACTCCCAAAGCTAGAATCTCTCATGCTGAACACCAACGCCCTCAGTGCCCTCTAC
CACGGCACCATAGAGTCTTTGCCGAACCTCAAGGAAATCAGCATACATAGCAATCCCATCCGTTGCGACT
GTGTAATCCGCTGGATTAACATGAACAAAACCAACATTCGGTTTATGGAACCAGACTCGCTGTTCTGTGT
GGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATTTGCCTC
CCTCTTATAGCTCCTGAGAGCTTTCCTTCTGACCTGGATGTAGAAGCTGACAGCTATGTGTCGCTTCACT
GCAGAGCTACTGCAGAACCCCAGCCAGAAATCTACTGGATCACACCTTCTGGTAAAAAACTATTGCCAAA
TACAATGAGAGAGAAGTTCTATGTTCATTCTGAAGGCACACTAGAGATAAGAGGCATAACCCCAAAGGAA
GGGGGGTTGTACACCTGCATAGCAACTAACCTAGTCGGTGCTGATTTGAAGTCGATTATGATCAAAGTGG
GAGGTTCTGTTCCTCAGGATAATAATGGGTCATTGAATATTAAAATAAGAGATATCAGGGCCAATTCTGT
TCTGGTGTCCTGGAAAGCGAGCTCTAAAATCCTCAAATCCAGCGTTAAGTGGACAGCCTTTGTCAAGACT
GAAGACTCTCATGCTGCCCAAAGTGCTCGAATACCATTTGATGTCAAGGTATATAATCTTACTCATCTGA
AACCATCTACCGAGTACAAAATTTGTATTGATATTCCCACCGTCTATCAGAAAAGCAGAAAACAATGTGT
GAATGTCACCACAAAAAGTCTGGAGCATGACGGAAAAGAATATGGAAAGAATCATACAGTATTTGTGGCC
TGTGTTGGAGGCCTTCTAGGGATCATTGGTGTAATGTGTCTTTTCAGCTGTGTCTCACAAGAAGGGAGCA
GTGAGGGTGAGCACAGCTATGCTGTGAATCACTGTCACAAGCCAGCCTTGGCTTTCAGTGAGCTTTACCC
TCCTCTAATCAACCTCTGGGAGTCCAGCAAAGAAAAACGGGCAACACTGGAAGTAAAAGCAACGGCTATA
GGAGTGCCGACAAATATGTCCTAA

Translation (707 aa):
MKDTPLQVHVLLGLAITTLVQAIDKKVDCPQLCTCEIRPWFTPRSIYMEASTVDCNDLGLLNFPARLPAD
TQILLLQTNNIARIEHSTDFPVNLTGLDLSQNNLSSVTNINVQKMSQLLSVYLEENKLTELPEKCLYGLS
NLQELYVNHNLLSTISPGAFIGLHNLLRLHLNSNRLQMINSQWFDALPNLEILMLGDNPIIRIKDMNFQP
LVKLRSLVIAGINLTEIPDDALAGLENLESISFYDNRLSKVPQVALQKAVNLKFLDLNKNPINRIRRGDF
SNMLHLKELGINNMPELVSIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNTNALSALY
HGTIESLPNLKEISIHSNPIRCDCVIRWINMNKTNIRFMEPDSLFCVDPPEFQGQNVRQVHFRDMMEICL
PLIAPESFPSDLDVEADSYVSLHCRATAEPQPEIYWITPSGKKLLPNTMREKFYVHSEGTLEIRGITPKE
GGLYTCIATNLVGADLKSIMIKVGGSVPQDNNGSLNIKIRDIRANSVLVSWKASSKILKSSVKWTAFVKT
EDSHAAQSARIPFDVKVYNLTHLKPSTEYKICIDIPTVYQKSRKQCVNVTTKSLEHDGKEYGKNHTVFVA
CVGGLLGIIGVMCLFSCVSQEGSSEGEHSYAVNHCHKPALAFSELYPPLINLWESSKEKRATLEVKATAI
GVPTNMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH