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Report for CCDS25872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25872.1 Public Mus musculus 12 Sypl1 23 108 98 CCDS HistoryNCBI Gene:19027Re-query CCDS DB by CCDS ID:25872.1Re-query CCDS DB by GeneID:19027See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076698.12 ENSMUSP00000075990.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076698.12Link to Ensembl Protein Viewer:ENSMUSP00000075990.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076698Re-query CCDS DB by Protein ID:ENSMUSP00000075990
Original member Current member NCBI NM_013635.3 NP_038663.2 Accepted alive Link to Nucleotide Sequence:NM_013635.3Link to Protein Sequence:NP_038663.2Re-query CCDS DB by Nucleotide ID:NM_013635Re-query CCDS DB by Protein ID:NP_038663Link to BLAST:NP_038663.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038663.2 261 O09117-1 261 100% 0 0

Chromosomal Locations for CCDS 25872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 32953968 32954018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32954288 32954359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32965373 32965500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32967536 32967743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32974128 32974319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32975590 32975724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCTTCCAAAGCCAACATGGTTCGTCAGCGGTTCAGCCGGCTGAGTCAGAGGATGTCCGCCTTCCAGA
TCAACCTCAACCCGCTCAAGGAGCCGCTCGGCTTCATCAAGATCCTCGAGTGGTTTGCCTCCATCTTTGC
TTTTGCCACCTGTGGTGGGTTTAAGGGCAAAACAGAAATTCAAGTGAACTGTCCTAAAGTTGGTGTCAAT
AAGAACCAGACTGTGACAGCTACTTTTGGTTATCCATTCAGGTTGAATCAGGCATCATTTCATACACCTC
CAAATGTCAGTGTGTGTGACGTGAACTGGGAAAAGCATGTTCTCATAGGTGATTACTCCTCTTCTGCACA
GTTCTACGTTACGTTTGCAGTCTTTGTGTTCCTGTACTGCATTGCTGCCCTTCTGCTCTATGTTGGTTAC
ACGAACCTCTACCGGGATAGTCGCAAACTGCCCATGATCGACTTTATTGTTACTCTTGTTGCTACTTTTT
TGTGGTTGGTGAGTTCCTCAGCCTGGGCTAAAGCTCTTACAGATATTAAAGTAGCTACTGGACACAGAAT
TGTGGAGGAACTTGAAATTTGTAATCCAGAATCAGGAGTGTCATGTTACTTTGTCTCTGTGACTAGTATG
GGCTCCCTGAATGTATCCGTGATCTTTGGCTTTCTGAATATGATACTTTGGGGAGGAAATGCTTGGTTTG
TGTACAAGGAGACCAGCTTACACAGTCCGTCAAATACGTCAGCTTCCCACAGCCAAGGCGGTGGCCCACC
CACTTCTGGAATGTAA

Translation (261 aa):
MASKANMVRQRFSRLSQRMSAFQINLNPLKEPLGFIKILEWFASIFAFATCGGFKGKTEIQVNCPKVGVN
KNQTVTATFGYPFRLNQASFHTPPNVSVCDVNWEKHVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVGY
TNLYRDSRKLPMIDFIVTLVATFLWLVSSSAWAKALTDIKVATGHRIVEELEICNPESGVSCYFVSVTSM
GSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSASHSQGGGPPTSGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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