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Report for CCDS25789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25789.1 Public Mus musculus 12 Ncoa1 23 108 98 CCDS HistoryNCBI Gene:17977Re-query CCDS DB by CCDS ID:25789.1Re-query CCDS DB by GeneID:17977See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085814.4 ENSMUSP00000082971.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085814.4Link to Ensembl Protein Viewer:ENSMUSP00000082971.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085814Re-query CCDS DB by Protein ID:ENSMUSP00000082971
Original member NCBI NM_010881.2 NP_035011.1 Updated not alive Link to Nucleotide Sequence:NM_010881.2Link to Protein Sequence:NP_035011.1Re-query CCDS DB by Nucleotide ID:NM_010881Re-query CCDS DB by Protein ID:NP_035011
Current member NCBI NM_010881.3 NP_035011.1 Accepted alive Link to Nucleotide Sequence:NM_010881.3Link to Protein Sequence:NP_035011.1Re-query CCDS DB by Nucleotide ID:NM_010881Re-query CCDS DB by Protein ID:NP_035011Link to BLAST:NP_035011.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035011.1 1405 P70365-2 1405 100% 0 0

Chromosomal Locations for CCDS 25789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4249846 4249890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4253657 4253746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4259212 4259395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4263434 4263608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4267607 4268009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4270747 4270848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4274694 4275008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4275173 4275341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4278102 4278219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4290814 4290994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4294910 4296248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4297476 4297623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4306424 4306564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4313026 4313121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4315686 4315865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4322868 4323045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4335781 4335878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4339018 4339184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4344397 4344485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4218 nt):
ATGAGTGGCCTTGGGGACAGTTCATCAGACCCTGCAAACCCAGACTCTCATAAGAGAAAAGGATCGCCAT
GTGACACGCTGGCATCAAGTACTGAGAAGAGGCGCAGGGAGCAAGAAAATAAGTATTTAGAAGAACTAGC
TGAACTACTGTCTGCCAACATCAGTGACATTGACAGCTTGAGTGTAAAACCAGATAAATGCAAGATTTTG
AAGAAGACAGTAGATCAGATACAGCTAATGAAGAGAATGGAGCAAGAGAAATCCACGACTGATGATGACG
TGCAGAAGTCCGACATCTCCTCGAGCAGCCAAGGAGTGATAGAGAAGGAGTCGCTGGGCCCTCTTCTTCT
GGAGGCTTTGGATGGATTTTTCTTTGTTGTGAACTGTGAAGGAAGAATTGTATTTGTATCAGAAAATGTG
ACCAGCTACTTGGGTTACAATCAGGAAGAATTAATGAATACCAGCGTCTACAGCATACTGCATGTGGGAG
ATCATGCAGAATTTGTCAAGAATCTGCTACCAAAATCACTAGTAAATGGAGTTCCTTGGCCTCAAGAGGC
AACACGCCGAAATAGCCATACATTTAACTGCAGGATGCTAATTCACCCTCCAGAGGACCCAGGTACTGAG
AACCAAGAAGCTTGCCAGCGCTATGAAGTAATGCAGTGTTTCACAGTGTCACAGCCAAAATCCATCCAAG
AAGATGGTGAAGATTTCCAGTCATGTCTGATTTGTATTGCTCGACGATTACCTCGGCCTCCAGCCATTAC
AGGTGTAGAATCCTTTATGACCAAGCAAGATACTACAGGCAAAATCATCTCTATTGACACTAGCTCCCTG
AGGGCTGCTGGCAGGACTGGCTGGGAAGACCTAGTAAGGAAGTGCATCTATGCTTTCTTCCAACCTCAGG
GCAGAGAGCCATCTTACGCCCGGCAGCTGTTTCAAGAAGTGATGACTCGTGGCACTGCCTCCAGCCCATC
CTATAGATTCATATTGAATGATGGGACAATGCTTAGCGCCCACACCAAGTGTAAACTTTGCTACCCTCAA
AGTCCTGACATGCAGCCTTTCATCATGGGAATTCATATCATCGACAGGGAGCACAGTGGGCTTTCTCCTC
AAGATGACAGTAATTCTGGAATGTCAATTCCCCGAATAAATCCCTCAGTCAATCCTGGTATCTCTCCAGC
CCATGGTGTGACCCGTTCATCCACGTTGCCACCATCCAACAACAACATGGTCTCTGCCAGAGTAAACCGC
CAACAGAGCTCAGACCTCAACAGCAGCAGCAGTCATACTAACTCTAGCAACAACCAAGGGAACTTTGGAT
GTTCACCTGGAAATCAGATTGTAGCCAATGTTGCCTTAAACCAGGGACAGGCAGGTTCCCAGAGCAGCAA
TCCCTCTTTAAACCTCAATAATTCTCCTATGGAAGGTACAGGAATTGCCCTCTCACAGTTCATGTCTCCG
AGGAGACAAGCTAATTCTGGCTTGGCAACAAGGGCCAGGATGTCAAACAATTCATTTCCTCCAAATATTC
CAACATTAAGCTCCCCAGTTGGCATTACTAGTGGTGCCTGTAATAATAATAATCGATCCTATTCAAATAT
CCCAGTAACATCTTTACAAGGTATGAATGAAGGACCCAATAACTCTGTTGGCTTCTCTGCTGGGTCTCCA
GTCCTTCGGCAGATGAGCTCACAGAATTCACCTAGCAGATTAAGTATGCAACCAGCAAAGGCTGAGTCCA
AAGACAGCAAAGAGATTGCATCCATTTTAAATGAAATGATTCAGTCCGACAACAGCGACAACAGTGCTAA
CGAAGGCAAGCCTCTGGACTCAGGACTTCTGCATAACAATGACAGACTCTCAGAAGGAGACAGTAAATAC
TCTCAAACTAGTCACAAGCTAGTACAGCTATTGACTACGACCGCAGAGCAGCAGTTACGGCATGCCGACA
TAGACACAAGCTGCAAAGATGTACTGTCTTGCACTGGTACTTCCAGCTCTGCCTCCTCTAACCCCTCAGG
AGGTACTTGTCCCTCTTCTCACAGCTCTCTGACTGAGCGGCATAAAATTCTGCACCGGCTTTTACAGGAG
GGCAGCCCCTCAGACATCACCACTTTGTCTGTGGAACCCGAGAAGAAGGACAGTGTGCCAGCCTCTACTG
CTGTGTCAGTGTCTGGACAATCCCAGGGGAGTGCCAGCATAAAACTGGAACTGGATGCTGCAAAGAAAAA
AGAGTCAAAAGACCATCAGCTCCTACGCTACCTTTTAGACAAAGATGAGAAAGATTTAAGGTCCACTCCA
AACCTGTGCCTGGATGACGTAAAGGTCAAAGTGGAGAAGAAAGAACAGATGGATCCTTGTAACACAAACC
CAACCCCAATGACCAAACCTGCTCCTGAGGAAGTTAAACTGGAGTCCCAGAGCCAGTTTACAGCTGACCT
TGACCAGTTTGATCAGTTATTGCCCACCCTGGAGAAGGCAGCACAGTTGCCGAGCTTGTGCGAGACAGAC
AGGATGGATGGTGCGGTCACCGGTGTCAGCATCAAGGCGGAGGTCCTGCCAGCGTCACTCCAGCCCACCA
CTGCCAGAGCTGCCCCCAGGCTGAGCAGATTGCCTGAACTAGAATTAGAAGCGATCGATAACCAGTTTGG
ACAACCAGGAGCGGGGGATCAGATTCCATGGGCAAATAATACTTTGACAACAATAAATCAGAATAAACCA
GAAGACCAATGTATTAGCTCACAGCTGGATGAGCTCCTCTGTCCACCAACAACAGTAGAAGGAAGAAACG
ATGAGAAGGCCCTTCTGGAACAACTGGTGTCTTTCCTCAGTGGCAAAGATGAAACGGAGCTGGCTGAGCT
AGACCGGGCACTGGGGATCGACAAGCTCGTCCAGGGAGGCGGATTAGATGTATTATCTGAGCGATTTCCA
CCACAGCAAGCAACACCACCTTTGATGATGGAAGACAGACCCACCCTCTATTCCCAGCCATACTCATCTC
CTTCTCCCACCGCTGGTCTCTCTGGCCCTTTCCAAGGCATGGTCCGGCAGAAGCCTTCACTGGGGGCTAT
GCCGGTTCAAGTAACACCTCCTCGAGGAACCTTTTCACCCAACATGGGCATGCAGCCCCGGCAGACTCTC
AATAGACCTCCAGCTGCACCCAACCAGCTTCGGCTGCAGCTGCAGCAGCGGCTACAGGGGCAGCAGCAGT
TGATGCACCAAAACCGGCAAGCCATCTTGAACCAGTTTGCAGCAAATGCTCCTGTTGGCATGAACATGAG
GTCAGGCATGCAGCAGCAGATCACACCTCAGCCACCCTTGAATGCTCAGATGTTGGCCCAGCGCCAGCGG
GAGTTGTACAGTCAGCAGCATCGACAGAGGCAAATTATACAGCAGCAGAGAGCCATGCTCATGAGGCACC
AAAGTTTTGGGAACAACATCCCTCCTTCATCTGGACTCCCAGTTCAAATGGGGACTCCCCGTCTTCCTCA
GGGTGCTCCCCAGCAGTTCCCCTACCCACCAAACTATGGTACAAACCCAGGAACCCCACCTGCCTCCACC
AGCCCTTTCTCTCAACTGGCAGCAAACCCTGAGGCCTCCTTGGCCACCCGCAGCAGCATGGTGAACAGAG
GCATGGCAGGGAACATGGGAGGACAGTTTGGCGCTGGCATCAGTCCTCAGATGCAGCAGAATGTCTTCCA
ATATCCAGGACCAGGACTAGTTCCCCAAGGTGAGGCCACCTTTGCCCCATCTCTAAGCCCTGGGAGCTCC
ATGGTGCCGATGCCAGTCCCTCCTCCTCAAAGCTCTCTGCTCCAGCAAACTCCACCTACTTCTGGGTACC
AGTCACCAGACATGAAGGCCTGGCAGCAAGGAACAATGGGAAACAACAATGTGTTCAGTCAAGCTGTCCA
GAGCCAGCCTGCACCTGCACAGCCAGGAGTGTACAACAACATGAGCATCACCGTGTCCATGGCAGGTGGA
AACGCAAACATTCAGAACATGAATCCAATGATGGGCCAGATGCAAATGAGCTCTCTGCAGATGCCAGGGA
TGAATACTGTGTGCTCTGAGCAGATGAATGATCCAGCACTGAGACACACAGGCCTCTACTGCAACCAGCT
CTCGTCCACTGACCTTCTCAAAACAGACGCAGATGGAAACCAGGACAAGAAGACAGAAGAGTTCTTCTCT
GTGGTGACTACAGACTAG

Translation (1405 aa):
MSGLGDSSSDPANPDSHKRKGSPCDTLASSTEKRRREQENKYLEELAELLSANISDIDSLSVKPDKCKIL
KKTVDQIQLMKRMEQEKSTTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCEGRIVFVSENV
TSYLGYNQEELMNTSVYSILHVGDHAEFVKNLLPKSLVNGVPWPQEATRRNSHTFNCRMLIHPPEDPGTE
NQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRLPRPPAITGVESFMTKQDTTGKIISIDTSSL
RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTKCKLCYPQ
SPDMQPFIMGIHIIDREHSGLSPQDDSNSGMSIPRINPSVNPGISPAHGVTRSSTLPPSNNNMVSARVNR
QQSSDLNSSSSHTNSSNNQGNFGCSPGNQIVANVALNQGQAGSQSSNPSLNLNNSPMEGTGIALSQFMSP
RRQANSGLATRARMSNNSFPPNIPTLSSPVGITSGACNNNNRSYSNIPVTSLQGMNEGPNNSVGFSAGSP
VLRQMSSQNSPSRLSMQPAKAESKDSKEIASILNEMIQSDNSDNSANEGKPLDSGLLHNNDRLSEGDSKY
SQTSHKLVQLLTTTAEQQLRHADIDTSCKDVLSCTGTSSSASSNPSGGTCPSSHSSLTERHKILHRLLQE
GSPSDITTLSVEPEKKDSVPASTAVSVSGQSQGSASIKLELDAAKKKESKDHQLLRYLLDKDEKDLRSTP
NLCLDDVKVKVEKKEQMDPCNTNPTPMTKPAPEEVKLESQSQFTADLDQFDQLLPTLEKAAQLPSLCETD
RMDGAVTGVSIKAEVLPASLQPTTARAAPRLSRLPELELEAIDNQFGQPGAGDQIPWANNTLTTINQNKP
EDQCISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDKLVQGGGLDVLSERFP
PQQATPPLMMEDRPTLYSQPYSSPSPTAGLSGPFQGMVRQKPSLGAMPVQVTPPRGTFSPNMGMQPRQTL
NRPPAAPNQLRLQLQQRLQGQQQLMHQNRQAILNQFAANAPVGMNMRSGMQQQITPQPPLNAQMLAQRQR
ELYSQQHRQRQIIQQQRAMLMRHQSFGNNIPPSSGLPVQMGTPRLPQGAPQQFPYPPNYGTNPGTPPAST
SPFSQLAANPEASLATRSSMVNRGMAGNMGGQFGAGISPQMQQNVFQYPGPGLVPQGEATFAPSLSPGSS
MVPMPVPPPQSSLLQQTPPTSGYQSPDMKAWQQGTMGNNNVFSQAVQSQPAPAQPGVYNNMSITVSMAGG
NANIQNMNPMMGQMQMSSLQMPGMNTVCSEQMNDPALRHTGLYCNQLSSTDLLKTDADGNQDKKTEEFFS
VVTTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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