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Report for CCDS25627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25627.1 Public Mus musculus 11 Ush1g 23 108 98 CCDS HistoryNCBI Gene:16470Re-query CCDS DB by CCDS ID:25627.1Re-query CCDS DB by GeneID:16470See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103037.4 ENSMUSP00000099326.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103037.4Link to Ensembl Protein Viewer:ENSMUSP00000099326.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103037Re-query CCDS DB by Protein ID:ENSMUSP00000099326
Original member Current member NCBI NM_176847.3 NP_789817.1 Accepted alive Link to Nucleotide Sequence:NM_176847.3Link to Protein Sequence:NP_789817.1Re-query CCDS DB by Nucleotide ID:NM_176847Re-query CCDS DB by Protein ID:NP_789817Link to BLAST:NP_789817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789817.1 461 Q80T11 461 100% 0 0

Chromosomal Locations for CCDS 25627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115316927 115316930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115317985 115319202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115321693 115321856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAATGACCAGTATCACCGGGCCGCCAGGGATGGCTATCTGGAACTCCTCAAGGAGGCCACCCGGAAGG
AGCTGAATGCCCCTGACGAGGATGGCATGACCCCGACTCTCTGGGCTGCCTACCATGGCAACCTGGAGTC
TCTGCGCCTCATTGTGAGCCGCGGGGGTGACCCGGATAAGTGTGACATCTGGGGAAACACACCCTTGCAT
CTGGCAGCTTCCAATGGTCACCTGCACTGCCTGTCCTTCCTCGTCTCCTTCGGGGCCAACATCTGGTGCC
TGGACAATGACTACCACACGCCACTGGACATGGCCGCTATGAAGGGCCACATGGAGTGCGTACGCTATCT
GGATTCCATCGCGGCCAAGCAGAGCAGCCTCAACCCCAAGCTGGTGGGCAAGCTGAAGGACAAGGCCTTC
CGCGAGGCAGAGCGGCGCATCCGCGAGTGCGCCAAGATGCAGCGCAAGCACCACGAGCGCATGGAGCGGC
GCTACCGGCGCGAGCTGGCCGAGCGCTCCGACACTCTCAGCTTCTCCAGCCTCACGTCCAGCACCCTGAG
CCGACGGCTGCAGCACATGACGCTGGGCAGCCAGCTGCCCTACTCGCAGGCCACGCTGCACGGTACGGCC
AAGGGCAAGGCCAAGATCCAGAAGAAGCTGGAGAGGCGCAAGCAGGGGGGCGAGGGCACCTTCAAGGTCT
CTGAGGACGGGCGCAAAAGCGTCCGATCGCTCTCCGGCCTGCAGTTGGGTAGTGATGTGATGTTTGTGCG
CCAGGGCACCTACGCCAACCCCAAGGAGTGGGGCCGTGCCCCACTCAGGGACATGTTCCTCTCGGACGAG
GACAGCGTCTCCCGTGCCACACTGGCTGCCGAGCCTGCTCACTCGGAGGTCAGCACCGACTCAGGCCACG
ACTCTTTGTTTACCCGCCCCGGCCTGGGTACCATGGTGTTTCGAAGGAACTATGTGAGCAGCGGGTTGCA
CGGGCTGGGCCGAGAGGACGGGGGTTTGGATGGGGCAGGCACGCCGCGGGGTCGGCTGCATAGTTCCCCC
AGCCTGGACGACGACAGCCTAGGCAGTGCCAACAGCTTGCAGGACCGCAGTTGCGGGGAAGAGCTGCCCT
GGGATGAGCTAGACTTGGGCTTGGATGAGGACCTGGAGCCCGAGACCAGCCCCTTGGAGACCTTCCTGGC
CTCGCTGCACATGGAAGACTTTGCCTCTCTCCTGCGGCACGAGAAGATTGACCTGGAGGCTCTGATGCTG
TGCTCTGACCTGGACCTGCGCAGCATCAGCGTGCCCCTGGGGCCTCGGAAGAAGATCCTGGGGGCCGTGA
GGAGGCGCAGGCAGGCTCTGGAGCGACCCCTGGCCCTGGAGGACACGGAGCTATGA

Translation (461 aa):
MNDQYHRAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRGGDPDKCDIWGNTPLH
LAASNGHLHCLSFLVSFGANIWCLDNDYHTPLDMAAMKGHMECVRYLDSIAAKQSSLNPKLVGKLKDKAF
REAERRIRECAKMQRKHHERMERRYRRELAERSDTLSFSSLTSSTLSRRLQHMTLGSQLPYSQATLHGTA
KGKAKIQKKLERRKQGGEGTFKVSEDGRKSVRSLSGLQLGSDVMFVRQGTYANPKEWGRAPLRDMFLSDE
DSVSRATLAAEPAHSEVSTDSGHDSLFTRPGLGTMVFRRNYVSSGLHGLGREDGGLDGAGTPRGRLHSSP
SLDDDSLGSANSLQDRSCGEELPWDELDLGLDEDLEPETSPLETFLASLHMEDFASLLRHEKIDLEALML
CSDLDLRSISVPLGPRKKILGAVRRRRQALERPLALEDTEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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