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Report for CCDS25099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25099.1 Public Mus musculus 11 Aldoc 23 108 98 CCDS HistoryNCBI Gene:11676Re-query CCDS DB by CCDS ID:25099.1Re-query CCDS DB by GeneID:11676See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017534.14 ENSMUSP00000017534.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017534.14Link to Ensembl Protein Viewer:ENSMUSP00000017534.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000017534Re-query CCDS DB by Protein ID:ENSMUSP00000017534
Original member Current member EBI ENSMUST00000102478.3 ENSMUSP00000099536.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102478.3Link to Ensembl Protein Viewer:ENSMUSP00000099536.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102478Re-query CCDS DB by Protein ID:ENSMUSP00000099536
Original member Current member NCBI NM_001303423.1 NP_001290352.1 Accepted alive Link to Nucleotide Sequence:NM_001303423.1Link to Protein Sequence:NP_001290352.1Re-query CCDS DB by Nucleotide ID:NM_001303423Re-query CCDS DB by Protein ID:NP_001290352Link to BLAST:NP_001290352.1
Original member Current member NCBI NM_009657.4 NP_033787.2 Accepted alive Link to Nucleotide Sequence:NM_009657.4Link to Protein Sequence:NP_033787.2Re-query CCDS DB by Nucleotide ID:NM_009657Re-query CCDS DB by Protein ID:NP_033787Link to BLAST:NP_033787.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290352.1 363 P05063 363 100% 0 0
NP_033787.2 363 P05063 363 100% 0 0

Chromosomal Locations for CCDS 25099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78324402 78324513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78324604 78324815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78324909 78324963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78325049 78325209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78325329 78325412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78325642 78325816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78325935 78326134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78326262 78326354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGCCCCACTCATACCCAGCTCTTTCTGCTGAGCAGAAGAAGGAGTTGTCGGATATTGCTCTACGGATCG
TGACCCCCGGCAAGGGCATTCTGGCTGCAGATGAGTCCGTAGGCAGCATGGCCAAAAGGCTGAGCCAAAT
TGGGGTGGAGAACACTGAGGAGAATCGCCGGCTGTACCGCCAGGTCCTATTCAGTGCTGATGACCGTGTG
AAAAAGTGCATTGGGGGGGTCATCTTCTTCCATGAGACACTCTACCAGAAAGATGACAATGGTGTCCCCT
TCGTCCGCACCATCCAGGATAAGGGCATTCTCGTAGGCATCAAGGTTGACAAGGGTGTAGTGCCTCTAGC
TGGGACCGACGGGGAAACCACCACTCAAGGGCTGGATGGGCTCTTGGAACGCTGTGCTCAGTATAAGAAG
GACGGTGCTGATTTTGCCAAATGGCGCTGTGTACTAAAAATCAGTGATCGCACGCCGTCGGCACTGGCCA
TATTGGAGAATGCCAACGTGCTGGCCCGCTATGCCAGCATCTGCCAGCAGAATGGGATCGTGCCTATTGT
GGAGCCTGAGATTCTGCCTGACGGAGACCATGACCTCAAACGTTGCCAGTATGTTACAGAGAAGGTCCTG
GCTGCTGTATACAAGGCCCTGAGTGACCATCATGTATACCTCGAAGGGACTCTGCTCAAGCCCAATATGG
TGACCCCTGGCCATGCCTGTCCCATCAAGTATAGCCCAGAAGAGATCGCCATGGCAACTGTCACTGCCCT
GCGTCGTACTGTGCCCCCAGCTGTCCCAGGGGTGACTTTCCTGTCTGGGGGTCAGAGTGAAGAGGAGGCT
TCTCTCAACCTCAATGCCATCAACCGCTGCCCACTTCCCCGGCCCTGGGCCCTCACCTTCTCCTATGGGC
GTGCCCTGCAGGCATCTGCACTCAATGCCTGGAGAGGACAAAGGGATAATGCTGGGGCTGCTACTGAGGA
GTTTATCAAGCGGGCAGAGATGAACGGGCTTGCAGCCCAGGGCAGATATGAAGGCAGTGGAGATGGCGGA
GCGGCAGCACAGTCCCTCTACATCGCCAACCATGCCTACTGA

Translation (363 aa):
MPHSYPALSAEQKKELSDIALRIVTPGKGILAADESVGSMAKRLSQIGVENTEENRRLYRQVLFSADDRV
KKCIGGVIFFHETLYQKDDNGVPFVRTIQDKGILVGIKVDKGVVPLAGTDGETTTQGLDGLLERCAQYKK
DGADFAKWRCVLKISDRTPSALAILENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVL
AAVYKALSDHHVYLEGTLLKPNMVTPGHACPIKYSPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEA
SLNLNAINRCPLPRPWALTFSYGRALQASALNAWRGQRDNAGAATEEFIKRAEMNGLAAQGRYEGSGDGG
AAAQSLYIANHAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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