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Report for CCDS24892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24892.1 Public Mus musculus 11 Cyb5d1 23 108 98 CCDS HistoryNCBI Gene:327951Re-query CCDS DB by CCDS ID:24892.1Re-query CCDS DB by GeneID:327951See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051620.4 ENSMUSP00000059709.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051620.4Link to Ensembl Protein Viewer:ENSMUSP00000059709.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051620Re-query CCDS DB by Protein ID:ENSMUSP00000059709
Original member Current member NCBI NM_001045525.2 NP_001038990.1 Accepted alive Link to Nucleotide Sequence:NM_001045525.2Link to Protein Sequence:NP_001038990.1Re-query CCDS DB by Nucleotide ID:NM_001045525Re-query CCDS DB by Protein ID:NP_001038990Link to BLAST:NP_001038990.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038990.1 228 Q5NCY3-1 228 100% 0 0

Chromosomal Locations for CCDS 24892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69393638 69393868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69394628 69394846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69394972 69395048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69395134 69395293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGCCGCGCCGGGGCCTAGTAGCCGGGCCAGACTTGGATAATTTTCAACGTCGGTATTTCACGCCGTCAG
AAGTAGCGGAACACAACCAGCTCGAGGACCTATGGGTGTCTTACCTGGGATTTGTTTACAATCTAACACC
GCTTGTCGAGGAATTCAAAGGGGACCTACTGTTGAAACCCATCCTGGAGGTCGCAGGCCAGGACATAAGT
CACTGGTTTGATCCACAGACTAGAGACATTCGCAAGCATATAGATCCACTCACTGGTTGCATGAGATACC
GTACCCCGCGGGGCCGCTTCGTACATATCCCGCCGCCACTGCCCCGTTCAGATTGGGCCAATGATTTCGG
AGTACCCTGGTGGAAGGGGGCAAATTACCAGGTGGGACGACTGTCTGCTCGGACCCGGAACATCCGTATT
ATTAACACTCTTGCAACGCAGGAGCACACACTGCAGGTGGGGGCTCAGGAATCAATGTGGGAAATCCTAC
ACCGCTATCTCCCCTATAATGCACATGCTGCCAGCTACACATGGAAATACGATGGGAAGAATTTGAACAT
GGATCAAACCCTGGAAGAAAACGGGATCCGGGATGAGGAAGAAGAGTTTGACTATCTTAACATGGATGGT
AAACTTCACACACCTGCAATACTGCTCTACTTCAATGATGACCTCACAGAGCTCTAG

Translation (228 aa):
MPRRGLVAGPDLDNFQRRYFTPSEVAEHNQLEDLWVSYLGFVYNLTPLVEEFKGDLLLKPILEVAGQDIS
HWFDPQTRDIRKHIDPLTGCMRYRTPRGRFVHIPPPLPRSDWANDFGVPWWKGANYQVGRLSARTRNIRI
INTLATQEHTLQVGAQESMWEILHRYLPYNAHAASYTWKYDGKNLNMDQTLEENGIRDEEEEFDYLNMDG
KLHTPAILLYFNDDLTEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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