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Report for CCDS2483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2483.1 Public Homo sapiens 2 HTR2B 24 110 108 CCDS HistoryNCBI Gene:3357Re-query CCDS DB by CCDS ID:2483.1Re-query CCDS DB by GeneID:3357See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258400.4 ENSP00000258400.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258400.4Link to Ensembl Protein Viewer:ENSP00000258400.3Re-query CCDS DB by Nucleotide ID:ENST00000258400Re-query CCDS DB by Protein ID:ENSP00000258400
Original member Current member NCBI NM_000867.5 NP_000858.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000867.5Link to Protein Sequence:NP_000858.3Re-query CCDS DB by Nucleotide ID:NM_000867Re-query CCDS DB by Protein ID:NP_000858Link to BLAST:NP_000858.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000858.3 481 P41595 481 100% 0 0

Chromosomal Locations for CCDS 2483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 231108517 231109409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231113729 231113929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231123413 231123764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGCTCTCTCTTACAGAGTGTCTGAACTTCAAAGCACAATTCCTGAGCACATTTTGCAGAGCACCTTTG
TTCACGTTATCTCTTCTAACTGGTCTGGATTACAGACAGAATCAATACCAGAGGAAATGAAACAGATTGT
TGAGGAACAGGGAAATAAACTGCACTGGGCAGCTCTTCTGATACTCATGGTGATAATACCCACAATTGGT
GGAAATACCCTTGTTATTCTGGCTGTTTCACTGGAGAAGAAGCTGCAGTATGCTACTAATTACTTTCTAA
TGTCCTTGGCGGTGGCTGATTTGCTGGTTGGATTGTTTGTGATGCCAATTGCCCTCTTGACAATAATGTT
TGAGGCTATGTGGCCCCTCCCACTTGTTCTATGTCCTGCCTGGTTATTTCTTGACGTTCTCTTTTCAACC
GCATCCATCATGCATCTCTGTGCCATTTCAGTGGATCGTTACATAGCCATCAAAAAGCCAATCCAGGCCA
ATCAATATAACTCACGGGCTACAGCATTCATCAAGATTACAGTGGTGTGGTTAATTTCAATAGGCATTGC
CATTCCAGTCCCTATTAAAGGGATAGAGACTGATGTGGACAACCCAAACAATATCACTTGTGTGCTGACA
AAGGAACGTTTTGGCGATTTCATGCTCTTTGGCTCACTGGCTGCCTTCTTCACACCTCTTGCAATTATGA
TTGTCACCTACTTTCTCACTATCCATGCTTTACAGAAGAAGGCTTACTTAGTCAAAAACAAGCCACCTCA
ACGCCTAACATGGTTGACTGTGTCTACAGTTTTCCAAAGGGATGAAACACCTTGCTCGTCACCGGAAAAG
GTGGCAATGCTGGATGGTTCTCGAAAGGACAAGGCTCTGCCCAACTCAGGTGATGAAACACTTATGCGAA
GAACATCCACAATTGGGAAAAAGTCAGTGCAGACCATTTCCAACGAACAGAGAGCCTCAAAGGTCCTAGG
GATTGTGTTTTTCCTCTTTTTGCTTATGTGGTGTCCCTTCTTTATTACAAATATAACTTTAGTTTTATGT
GATTCCTGTAACCAAACTACTCTCCAAATGCTCCTGGAGATATTTGTGTGGATAGGCTATGTTTCCTCAG
GAGTGAATCCTTTGGTCTACACCCTCTTCAATAAGACATTTCGGGATGCATTTGGCCGATATATCACCTG
CAATTACCGGGCCACAAAGTCAGTAAAAACTCTCAGAAAACGCTCCAGTAAGATCTACTTCCGGAATCCA
ATGGCAGAGAACTCTAAGTTTTTCAAGAAACATGGAATTCGAAATGGGATTAACCCTGCCATGTACCAGA
GTCCAATGAGGCTCCGAAGTTCAACCATTCAGTCTTCATCAATCATTCTACTAGATACGCTTCTCCTCAC
TGAAAATGAAGGTGACAAAACTGAAGAGCAAGTTAGTTATGTATAG

Translation (481 aa):
MALSYRVSELQSTIPEHILQSTFVHVISSNWSGLQTESIPEEMKQIVEEQGNKLHWAALLILMVIIPTIG
GNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFST
ASIMHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGIETDVDNPNNITCVLT
KERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKKAYLVKNKPPQRLTWLTVSTVFQRDETPCSSPEK
VAMLDGSRKDKALPNSGDETLMRRTSTIGKKSVQTISNEQRASKVLGIVFFLFLLMWCPFFITNITLVLC
DSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYRATKSVKTLRKRSSKIYFRNP
MAENSKFFKKHGIRNGINPAMYQSPMRLRSSTIQSSSIILLDTLLLTENEGDKTEEQVSYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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