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Report for CCDS24614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24614.1 Public Mus musculus 11 Or2y13 23 108 98 CCDS HistoryNCBI Gene:404337Re-query CCDS DB by CCDS ID:24614.1Re-query CCDS DB by GeneID:404337See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077143.6 ENSMUSP00000076390.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077143.6Link to Ensembl Protein Viewer:ENSMUSP00000076390.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000077143Re-query CCDS DB by Protein ID:ENSMUSP00000076390
Original member Current member EBI ENSMUST00000204706.2 ENSMUSP00000145258.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204706.2Link to Ensembl Protein Viewer:ENSMUSP00000145258.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204706Re-query CCDS DB by Protein ID:ENSMUSP00000145258
Original member Current member NCBI NM_207574.1 NP_997457.1 Accepted alive Link to Nucleotide Sequence:NM_207574.1Link to Protein Sequence:NP_997457.1Re-query CCDS DB by Nucleotide ID:NM_207574Re-query CCDS DB by Protein ID:NP_997457Link to BLAST:NP_997457.1

Chromosomal Locations for CCDS 24614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49523725 49524660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAGCAGCTTCAACACCACCTTAAAAGGTGGCTTCATTTTGATGGGCTTCTCAGACTGGCCTCAACTGG
AACATATCTTTTTTGTCTTCATTTCAATGTTCTATATCCTAACCATCTTTGGAAACTTCACCATCATCAC
AATCTCACGAATGGATCAGCGACTACAAACACCAATGTACTTCTTCCTTAACAACCTCTCTTTCCTGGAC
CTCTGCTACACCACCAGCATTGTACCTCAGCTTCTTGTCAATATTTCTGGAATTGACAAGACCATGAGCT
ATGCTGGGTGTATGACCCAGTTCTTCATAGTGCTCTTACTGGGTGGAACTGAGTGTATGCTCCTTGTGGT
GATGGCTTTCGACCGCTATGTCGCTGTGTGTCATCCACTACACTACACCAGCATTATGCACCCCCTTCTC
TGCCATGCATTGGCCATCTCCTCCTGGGTGGGAGGCCTTGTGAACTCTCTGACTCAGACAAGCCTCATCA
TGACCATACCTCTCTGTGGCCATCACCTGAACCACTTCTTCTGTGAGATGCTTGTTCTCCTGAAGCTGGC
TTGTGAGGACACAGGAGGAACAGAGGCCAACTTGTTTGTGGCTGGAGCTGTAATTTTGGTCTGTCCTGTA
GCACTAATTCTAGGCACCTATGCACACATTGCTCATGCAGTGTTGAAGATCAAGTCAAGATCTGGGCGCA
GAAAGGCCCTGGGGACTTGTGGGTCCCACCTTACTGTGGTTTTTCTTTTTTATGGCTCAGCCATGTACAC
CTATCTCCAACCTGTCCATGTGTATTCCGGGAGTGAAGGGAAGTTTGCTGCCCTCTTTTATACTATCATT
ACTCCAATGCTGAACCCTCTGATTTATACCCTAAGAAACAAGGATGTGAAGGGGGCTCTATGCAAGGTAC
TAGGGAGAGATACAAGCACAACATAG

Translation (311 aa):
MSSFNTTLKGGFILMGFSDWPQLEHIFFVFISMFYILTIFGNFTIITISRMDQRLQTPMYFFLNNLSFLD
LCYTTSIVPQLLVNISGIDKTMSYAGCMTQFFIVLLLGGTECMLLVVMAFDRYVAVCHPLHYTSIMHPLL
CHALAISSWVGGLVNSLTQTSLIMTIPLCGHHLNHFFCEMLVLLKLACEDTGGTEANLFVAGAVILVCPV
ALILGTYAHIAHAVLKIKSRSGRRKALGTCGSHLTVVFLFYGSAMYTYLQPVHVYSGSEGKFAALFYTII
TPMLNPLIYTLRNKDVKGALCKVLGRDTSTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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