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Report for CCDS24606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24606.1 Public Mus musculus 11 Or2y1e 23 108 98 CCDS HistoryNCBI Gene:258460Re-query CCDS DB by CCDS ID:24606.1Re-query CCDS DB by GeneID:258460See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187509.2 ENSMUSP00000140343.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187509.2Link to Ensembl Protein Viewer:ENSMUSP00000140343.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187509Re-query CCDS DB by Protein ID:ENSMUSP00000140343
Original member Current member EBI ENSMUST00000215671.1 ENSMUSP00000150635.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215671.1Link to Ensembl Protein Viewer:ENSMUSP00000150635.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215671Re-query CCDS DB by Protein ID:ENSMUSP00000150635
Original member Current member NCBI NM_146468.1 NP_666679.1 Accepted alive Link to Nucleotide Sequence:NM_146468.1Link to Protein Sequence:NP_666679.1Re-query CCDS DB by Nucleotide ID:NM_146468Re-query CCDS DB by Protein ID:NP_666679Link to BLAST:NP_666679.1

Chromosomal Locations for CCDS 24606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49327413 49328348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGGAAGCTTTAATGCCAGTTTGGGTAAAGGCTTCATTTTGGTGGGCTTTTCAGACTGGCCTCAATTAG
AACTCATTCTTTTTATCTATGTTTTGATTTTCTACTCCTTAACTCTCTTTGGCAACACCACCATCATCGC
TCTGTCACAACTGGACATTCGATTGCACACCCCCATGTACTTCTTCCTCTCGCACCTCTCCTTCCTGGAC
CTCTGCTACACCACAAGCACCGTGCCCCAGCTCCTGATCAATATTGCTGCACAGGATCATACCATCACCT
ATGGAAGGTGTGTGGCCCAGCTGTTCAGTGTCCTTGCCCTGGGCTCTACAGAGAGTATGCTTCTAGTGGT
GATGGCCTTTGACCGCTATGCAGCTGTGTGCCGTCCACTACACTACACAACCATTATGCACCCTCTTCTG
TGCCAGGCTTTAGCTATCTCTTCTTGGGTAGCAGGCCTCGTGAACTCTCTGATCCAGACAGGTCTCATGA
TGGCCATGCCTCTCTGCAGGTATCGACTGAATCACTTCTTCTGTGAGATGCCTGTCTTCCTCAAGTTGGC
TTGCAAGGATACAGCTGGAACAGAGGCCAAGATGTTTGTGGCGAGAGCCATAATCTTGGTATTCCCAGCA
ACATTGATTCTAGGATCGTATGCCCACATTGCCAGGGCTGTACTGAAGGTCAAGTCAACATCTGGTCGCA
GAAAAGCTTTTGGGACGTGTGGATCACACCTCCTTGTAGTTTCTATGTTTTATGGCTCAACCATCTACAC
GTACTTGCAACCAAATGACAGTTATTCTGAGAATGAGGGAAAGTTTGTGGCCCTTTTTTATACTATAGTT
ACCCCCATGCTCAACCCTCTGATCTATACACTGAGGAACAAGGATGTAAAGGGGGCTCTGTGGAAGGTGC
TAGGGAGAGGCACAGACTCCAGGTAG

Translation (311 aa):
MGSFNASLGKGFILVGFSDWPQLELILFIYVLIFYSLTLFGNTTIIALSQLDIRLHTPMYFFLSHLSFLD
LCYTTSTVPQLLINIAAQDHTITYGRCVAQLFSVLALGSTESMLLVVMAFDRYAAVCRPLHYTTIMHPLL
CQALAISSWVAGLVNSLIQTGLMMAMPLCRYRLNHFFCEMPVFLKLACKDTAGTEAKMFVARAIILVFPA
TLILGSYAHIARAVLKVKSTSGRRKAFGTCGSHLLVVSMFYGSTIYTYLQPNDSYSENEGKFVALFYTIV
TPMLNPLIYTLRNKDVKGALWKVLGRGTDSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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