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Report for CCDS24519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24519.1 Public Mus musculus 11 Rhbdf1 23 108 98 CCDS HistoryNCBI Gene:13650Re-query CCDS DB by CCDS ID:24519.1Re-query CCDS DB by GeneID:13650See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020524.14 ENSMUSP00000020524.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020524.14Link to Ensembl Protein Viewer:ENSMUSP00000020524.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020524Re-query CCDS DB by Protein ID:ENSMUSP00000020524
Original member Current member NCBI NM_010117.2 NP_034247.2 Accepted alive Link to Nucleotide Sequence:NM_010117.2Link to Protein Sequence:NP_034247.2Re-query CCDS DB by Nucleotide ID:NM_010117Re-query CCDS DB by Protein ID:NP_034247Link to BLAST:NP_034247.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034247.2 856 Q6PIX5-1 856 100% 0 0

Chromosomal Locations for CCDS 24519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32209804 32210223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32210398 32210551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32210658 32210758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32210827 32210902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32211111 32211205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32211582 32211645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32211920 32212020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32212623 32212784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32212868 32212942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32213052 32213163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32213260 32213517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32213952 32214109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32214182 32214304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32214393 32214602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32214910 32215123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32215934 32216064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32216142 32216258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGAGTGAAGCCAGGAGAGACAGTACTAGCAGCCTGCAACGCAAGAAACCCCCATGGCTCAAGTTGGACA
TCCCAGCCGCGGTGCCCCCGGCAGCAGAGGAGCCCAGCTTCCTGCAGCCCCTGCGGCGACAGGCTTTCTT
GCGGAGTGTGAGTATGCCAGCTGAGACAGCCCGGGTCCCATCACCCCACCATGAGCCTCGCCGGCTGGTG
CTGCAGCGTCAGACATCCATCACACAGACCATCCGCAGGGGGACAGCAGACTGGTTTGGAGTGAGCAAGG
ACAGTGACAGCACCCAGAAGTGGCAGCGCAAGAGCATCCGTCACTGCAGCCAGCGGTATGGGAAGCTAAA
GCCGCAGGTCATCCGGGAGCTGGACCTGCCCAGCCAGGACAATGTGTCCCTAACCAGCACCGAGACACCA
CCTCCCCTCTACGTGGGGCCATGCCAGCTGGGCATGCAGAAGATCATAGACCCTCTGGCCCGAGGCCGGG
CCTTTCGCATGGCTGATGACACTGCTGATGGCCTGAGTGCCCCCCACACTCCCGTCACACCAGGTGCAGC
CTCCCTCTGCTCTTTCTCCAGCTCCCGCTCAGGTTTCAACCGACTCCCTCGGCGTCGCAAACGTGAATCG
GTGGCCAAGATGAGCTTCCGGGCCGCTGCAGCATTGGTGAAGGGTCGGTCTATTAGGGATGGCACTTTAC
GAAGGGGACAGCGCCGAAGCTTTACCCCTGCCAGCTTTCTTGAGGAAGACATGGTGGACTTCCCTGATGA
GTTGGATACATCTTTCTTTGCTCGGGAAGGTGTCCTCCACGAGGAGATGTCCACGTACCCAGATGAGGTG
TTTGAGTCCCCATCAGAGGCAGCGCTCAAGGACTGGGAGAAAGCCCCGGATCAGGCCGACCTCACGGGTG
GGGCCCTGGACCGCAGTGAGCTTGAGAGAAGCCACTTGATGTTGCCCCTGGAACGAGGCTGGAGAAAGCA
GAAGGAAGGCGGCCCTCTAGCCCCGCAGCCCAAGGTGCGGCTTCGCCAGGAGGTGGTCAGTGCGGCGGGA
CCCAGGAGGGGTCAGCGTATCGCTGTGCCAGTGCGCAAACTCTTCGCTCGGGAAAAGCGGCCTTATGGTC
TGGGGATGGTGGGACGGCTCACCAACCGCACGTACCGGAAACGCATCGACAGCTATGTCAAGCGGCAGAT
CGAGGACATGGATGATCACAGGCCCTTCTTCACTTACTGGCTCACCTTTGTGCACTCACTGGTCACCATT
CTGGCTGTGTGCATCTATGGCATAGCGCCCGTGGGCTTCTCGCAGCATGAGACGGTGGACTCGGTACTTC
GGAAGCGGGGTGTCTATGAGAATGTCAAATACGTCCAGCAGGAGAACTTCTGGATTGGCCCCAGCTCGGA
GGCCCTCATTCACTTGGGTGCCAAGTTCTCACCCTGCATGCGTCAGGACCCACAGGTGCACAGCTTCATC
CTGGCTGCCCGGGAGCGTGAAAAGCACTCGGCTTGCTGTGTACGCAATGATCGGTCTGGGTGTGTGCAGA
CTTCCAAGGAGGAGTGCTCGTCCACGTTGGCGGTGTGGGTGAAGTGGCCCGTTCATCCTAGTGCCCCAGA
CCTTGCAGGCAACAAGAGACAGTTTGGTTCTGTCTGCCACCAGGACCCCAGGGTATGTGACGAGCCTTCC
TCTGAGGATCCCCACGAGTGGCCAGAAGATATCACCAAGTGGCCGATCTGCACCAAAAGCAGCGCGGGGA
ACCACACTAACCACCCTCACATGGATTGTGTCATAACAGGCCGGCCTTGCTGCATCGGCACCAAGGGCAG
GTGTGAGATCACCTCCCGGGAGTACTGTGACTTCATGAGGGGCTACTTCCATGAGGAGGCCACACTCTGC
TCTCAGGTGCACTGCATGGACGATGTCTGTGGCCTCCTGCCTTTCCTCAATCCTGAGGTGCCTGACCAGT
TCTACCGCCTGTGGCTGTCCCTCTTCCTGCACGCTGGGATCCTGCACTGCTTGGTGTCCGTCTGCTTCCA
GATGACGGTCCTGCGGGACCTGGAGAAGCTGGCAGGCTGGCACCGCATAGCCATCATCTACCTGCTGAGT
GGTATCACGGGCAATCTAGCCAGTGCCATCTTCCTGCCATACCGGGCAGAGGTAGGTCCGGCCGGCTCCC
AGTTTGGCATCCTGGCCTGCCTCTTTGTGGAGTTGTTCCAGAGCTGGCAGATCCTGGCCCGACCCTGGCG
TGCCTTCTTCAAGCTCCTGGCCGTGGTGCTCTTCCTCTTTGCCTTTGGGCTGCTGCCCTGGATCGACAAC
TTCGCCCACATCTCGGGCTTTGTCAGCGGCCTCTTCCTTTCCTTTGCCTTCCTGCCTTACATCAGCTTTG
GCAAGTTCGACCTGTACCGCAAGCGCTGCCAGATCATCATCTTCCAGGTCGTCTTCCTGGGCCTGCTGGC
CGGCCTGGTGGTCCTCTTCTACTTCTACCCGGTGCGCTGTGAATGGTGCGAGTTCCTCACCTGCATCCCT
TTCACGGACAAGTTCTGTGAAAAGTACGAGCTGGACGCTCAGCTCCACTGA

Translation (856 aa):
MSEARRDSTSSLQRKKPPWLKLDIPAAVPPAAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLV
LQRQTSITQTIRRGTADWFGVSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETP
PPLYVGPCQLGMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES
VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFAREGVLHEEMSTYPDEV
FESPSEAALKDWEKAPDQADLTGGALDRSELERSHLMLPLERGWRKQKEGGPLAPQPKVRLRQEVVSAAG
PRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSYVKRQIEDMDDHRPFFTYWLTFVHSLVTI
LAVCIYGIAPVGFSQHETVDSVLRKRGVYENVKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFI
LAAREREKHSACCVRNDRSGCVQTSKEECSSTLAVWVKWPVHPSAPDLAGNKRQFGSVCHQDPRVCDEPS
SEDPHEWPEDITKWPICTKSSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHEEATLC
SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLS
GITGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDN
FAHISGFVSGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYFYPVRCEWCEFLTCIP
FTDKFCEKYELDAQLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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