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Report for CCDS24297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24297.1 Public Mus musculus 10 Cd63 23 108 98 CCDS HistoryNCBI Gene:12512Re-query CCDS DB by CCDS ID:24297.1Re-query CCDS DB by GeneID:12512See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026407.8 ENSMUSP00000026407.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026407.8Link to Ensembl Protein Viewer:ENSMUSP00000026407.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026407Re-query CCDS DB by Protein ID:ENSMUSP00000026407
Original member Current member EBI ENSMUST00000105229.8 ENSMUSP00000100862.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105229.8Link to Ensembl Protein Viewer:ENSMUSP00000100862.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105229Re-query CCDS DB by Protein ID:ENSMUSP00000100862
Original member Current member EBI ENSMUST00000219317.1 ENSMUSP00000151313.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219317.1Link to Ensembl Protein Viewer:ENSMUSP00000151313.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219317Re-query CCDS DB by Protein ID:ENSMUSP00000151313
Original member NCBI NM_001042580.1 NP_001036045.1 Updated not alive Link to Nucleotide Sequence:NM_001042580.1Link to Protein Sequence:NP_001036045.1Re-query CCDS DB by Nucleotide ID:NM_001042580Re-query CCDS DB by Protein ID:NP_001036045
Current member NCBI NM_001042580.2 NP_001036045.1 Accepted alive Link to Nucleotide Sequence:NM_001042580.2Link to Protein Sequence:NP_001036045.1Re-query CCDS DB by Nucleotide ID:NM_001042580Re-query CCDS DB by Protein ID:NP_001036045Link to BLAST:NP_001036045.1
Original member NCBI NM_001282966.1 NP_001269895.1 Updated not alive Link to Nucleotide Sequence:NM_001282966.1Link to Protein Sequence:NP_001269895.1Re-query CCDS DB by Nucleotide ID:NM_001282966Re-query CCDS DB by Protein ID:NP_001269895
Current member NCBI NM_001282966.2 NP_001269895.1 Accepted alive Link to Nucleotide Sequence:NM_001282966.2Link to Protein Sequence:NP_001269895.1Re-query CCDS DB by Nucleotide ID:NM_001282966Re-query CCDS DB by Protein ID:NP_001269895Link to BLAST:NP_001269895.1
Original member NCBI NM_007653.3 NP_031679.1 Updated not alive Link to Nucleotide Sequence:NM_007653.3Link to Protein Sequence:NP_031679.1Re-query CCDS DB by Nucleotide ID:NM_007653Re-query CCDS DB by Protein ID:NP_031679
Current member NCBI NM_007653.4 NP_031679.1 Accepted alive Link to Nucleotide Sequence:NM_007653.4Link to Protein Sequence:NP_031679.1Re-query CCDS DB by Nucleotide ID:NM_007653Re-query CCDS DB by Protein ID:NP_031679Link to BLAST:NP_031679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036045.1 238 P41731 238 100% 0 0
NP_001269895.1 238 P41731 238 100% 0 0
NP_031679.1 238 P41731 238 100% 0 0

Chromosomal Locations for CCDS 24297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128910406 128910471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128911452 128911640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128911795 128911869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128911968 128912063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128912161 128912301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128912438 128912521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128912675 128912740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCGGTGGAAGGAGGAATGAAGTGTGTCAAGTTTTTGCTCTACGTTCTCCTGCTGGCCTTCTGCGCCT
GTGCAGTGGGATTGATCGCCATTGGTGTAGCGGTTCAGGTTGTCTTGAAGCAGGCCATTACCCATGAGAC
TACTGCTGGCTCGCTGTTGCCTGTGGTCATCATTGCAGTGGGTGCCTTCCTCTTCCTGGTGGCCTTTGTG
GGCTGCTGTGGGGCCTGCAAGGAGAACTACTGTCTCATGATTACATTTGCCATCTTCCTGTCTCTTATCA
TGCTTGTGGAGGTGGCTGTGGCCATTGCTGGCTATGTGTTTAGAGACCAGGTGAAGTCAGAGTTTAATAA
AAGCTTCCAGCAGCAGATGCAGAATTACCTTAAAGACAACAAAACAGCCACTATTTTGGACAAATTGCAG
AAAGAAAATAACTGCTGTGGAGCTTCTAACTACACAGACTGGGAAAACATCCCCGGCATGGCCAAGGACA
GAGTCCCCGATTCTTGCTGCATCAACATAACTGTGGGCTGTGGGAATGATTTCAAGGAATCCACTATCCA
TACCCAGGGCTGCGTGGAGACTATAGCAATATGGCTAAGGAAGAACATACTGCTGGTGGCTGCAGCGGCC
CTGGGCATTGCTTTTGTGGAGGTCTTGGGAATTATCTTCTCCTGCTGTCTGGTGAAGAGTATTCGAAGTG
GCTATGAAGTAATGTAG

Translation (238 aa):
MAVEGGMKCVKFLLYVLLLAFCACAVGLIAIGVAVQVVLKQAITHETTAGSLLPVVIIAVGAFLFLVAFV
GCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEFNKSFQQQMQNYLKDNKTATILDKLQ
KENNCCGASNYTDWENIPGMAKDRVPDSCCINITVGCGNDFKESTIHTQGCVETIAIWLRKNILLVAAAA
LGIAFVEVLGIIFSCCLVKSIRSGYEVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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