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Report for CCDS24241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24241.1 Public Mus musculus 10 R3hdm2 23 108 98 CCDS HistoryNCBI Gene:71750Re-query CCDS DB by CCDS ID:24241.1Re-query CCDS DB by GeneID:71750See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064793.12 ENSMUSP00000069724.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064793.12Link to Ensembl Protein Viewer:ENSMUSP00000069724.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064793Re-query CCDS DB by Protein ID:ENSMUSP00000069724
Original member Current member NCBI NM_027900.4 NP_082176.4 Accepted alive Link to Nucleotide Sequence:NM_027900.4Link to Protein Sequence:NP_082176.4Re-query CCDS DB by Nucleotide ID:NM_027900Re-query CCDS DB by Protein ID:NP_082176Link to BLAST:NP_082176.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082176.4 999 Q80TM6-4 999 100% 0 0

Chromosomal Locations for CCDS 24241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127444311 127444475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127451992 127452033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127452692 127452778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127454630 127454756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127457650 127457728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127458139 127458198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127458810 127458950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127459467 127459575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127464982 127465013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127465131 127465184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127471768 127472000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127476520 127476698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127481693 127481755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127483976 127484218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127484506 127484632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127484862 127485022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127485416 127485570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127487775 127487875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127492569 127492738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127495021 127495168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127497162 127497259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127497541 127497625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127498369 127498709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3000 nt):
ATGTCTAACAGTAACACTACTCAGGAGACTCTGGAAATAATGAAAGAATCAGAAAAAAAACTGGTGGAAG
AA
TCTGTAAACAAAAATAAATTTATATCCAAAACTCCAAGTAAGGAAGACGTCGAGAAGGAGGGTGAAGA
G
AATGGTCTGCGTCAGGAGACACAGAGACGGACATCCAGTCATGGCCATGCCAGGAAAAGAGCCAAGTCT
AAT
TCCAAACTCAAGTTGGTGCGCAGTCTGGCAGTCTGTGAGGAATCCTCCACTCCATTTGTCGATGGGC
CA
CTAGACACCCAGGATATAATTCAACTGCACATCAGCTGCCCCTCTGACAAGGAGGAAGAAAAGTCCAC
A
AAAGATGTCTCTGAAAAGGAAGACAAGGACAAAAGCAAAGAAAAGGTCCCAAGGAAGATGCTATCCAGA
G
AC
TCCAGCCAAGAATATACCGACTCCACTGGAATAGATCTACATGAATTTCTTGTAAATACACTGAAAA
AG
AACCCAAGGGACAGAATGATGCTGCTAAAGTTAGAGCAAGAGATTCTGGACTTCATCAATGACAACAA
C
AACCAGTTCAAGAAGTTCCCTCAGATGACCTCATATCACCGGATGCTATTACATCGGGTAGCTGCCTAC
TTT
GGGATGGACCACAATGTTGATCAAACAGGGAAAGCTGTCATCATCAACAAAACCAGCAGCACGAGGA
T
C
CCTGAACAGAGGTTCTCAGAACATATAAAAGATGAAAAGAACACGGAATTTCAACAGAGGTTCATTCT
C
AAGAGAGATGATGCCAGTATGGACCGAGATGATAACCAGACCGGCCAGAATGGATATCTGAATGACATC
AG
A
CTCTCCAAAGAAGCCTTTTCTTCTAGCTCTCACAAGAGAAGGCAGATTTTTAGGGGAAACCGGGAAG
GG
CTGAGCCGTACCTCAAGCAGCCGACAGAGCAGCACAGACAGCGAGCTCAAGTCCCTGGAGCCACGGCC
T
TGGAGCAGCACAGACTCAGATGGCTCTGTCCGCAGCATGCGACCTCCTGTCACCAAAGCCAGCAGCTTC
AGT
GGAATCTCCATCCTCACCCGAGGCGACAGCATTGGCAGCAGTAAAGGCGGCAGTGCAGGCAGGCTCT
CC
AGGCCAGGCATGGCACTAGGTGCCCCAGAAGTGTGCAACCAGGTCACCTCACCCCAGTCTGTCCGGGG
C
CTTCTTCCTTGTACTGCCCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACTTCCTGCTCTCCCA
CCC
ACTCCTCAACACCAGCCACCCTTGAATAATCACATGATTTCACAGCCAGTCCCGGCCCTGCAGCCCT
CT
CCACAGCCGGTTCAGTTTTCTCCAAGCTCCTGTCCCCAGGCAGAAGACCTCAGCAACCCCTTTGGACA
A
ATGAGCCTTAGCCGCCAAGGTTCTACTGAAGCAGCTGACCCCTCCTCGGCTTTGTTCCAGCCCCCACTT
ATC
TCCCAGCATCCTCAGCAAGCTAGTTTCATCATGGCTTCTGCAGGACAGCCCCTTCCCACTTCCAATT
AT
TCCACTTCTAGCCATGCTCCACCTACCCAGCAAGTCCTGCCACCCCAAGGCTACATGCAGCCCCCTCA
A
CAGATCCAGGTTTCTTACTACCCTCCTGGACAGTATCCTAATTCCAACCAGCAATATCGACCTCTGTCT
CAC
CCGGTGGCCTATAGCCCCCAGCGTGGTCAACAGCTGCCTCAAGCATCCCAGCAGCCTGGCTTACAGC
CC
ATGATGTCTAACCAGCAGCAGACGGCTTACCAAGGCATGCTTGGGGTCCAGCAGCCTCAGAACCAGGG
C
CTACTCAGCAACCAGAGGAGCAGCATGGGAGGCCAGATGCAAGGCCTGGTGGTGCAGTACACTCCACTG
CCT
TCTTACCAAGTCCCTGTGGGCAGTGACTCACAAAACGTGGTCCAGCCATCCTTCCAGCAGCCCATGC
TG
GTTCCTGCCAGCCAGTCTGTGCAAGGAGGCCTCCCAACAGGAGGTGTGCCTGTGTACTACAGCATGAT
C
CCACCAGCTCAGCAGAACGGAACGAGCCCTTCTGTGGGCTTTCTGCAGCCTCCTGGCTCTGAGCAGTAC
CAG
ATGCCTCAGTCTCCCTCTCCCTGCAGCCCACCACAGATGTCACAGCAGTACTCAGGAGTGTCACCTT
CT
GGACCAGGTGTGGTGGTCATGCAACTGAATGTCCCTAACGGACCCCAGGCCCCCCAGAATCCATCCAT
G
GTCCAATGGAGTCACTGCAAATACTACAGCGTGGAGCAGCGTGGTCAGAAGCCTGGAGACCTGTACAGC
CCT
GATGGGAGCCCCCAGGCCAACGCACAAATGGGCAGCAGCCCCGTCACATCTCCTACCCAGTCTCCAG
CA
CCCTCTCCTGTCACGAGCCTCAGCAACGTCTGCACTGGACTCAGCCCCCTGCCTGTCCTCACACCATT
C
CCCCGGCCTGGGGGTCCTGCACAGGGTGACGGGCGCTATTCCCTACTGGGTCAGCCATTACAGTACAAT
CTG
TCCATCTGCCCTCCCTTGCTCCATGGCCAGTCAACTTACACGGTGCACCAGGGACAGAGCGGATTGA
AG
CACGGAAACCGGGGCAAGAGACAAGCACTGAAATCTGCCTCCACTGACCTGGGGACAGCAGATGTTGT
G
CTTGGAAGGGTGCTGGAGGTGACTGACCTCCCTGAAGGAATCACCCGTACGGAGGCTGACAAACTCTTC
ACC
CAGCTTGCCATGTCTGGTGCCAAGATCCAGTGGCTTAAGGATGCTCAGGGGCTGCCTGGTGCAGGCG
GG
GGGGACAACAGTGGGACTGCTGAGAACGGCCGCCACCCGGACCTCGCAGCCCTGTACACGATAGTGGC
T
GTGTTCCCCAGCCCCCTGGCCGCCCAGAACGCCTCCCTTCGCCTCAACAACTCTGTGAGTCGCTTCAAA
CTC
CGAGTGGCTAAAAAGAACTACGACCTGAGGATCCTGGAACGAGCTAGCTCTCAATAG


Translation (999 aa):
MSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEDVEKEGEENGLRQETQRRTSSHGHARKRAKS
N
SKLKLVRSLAVCEESSTPFVDGPLDTQ
DIIQLHISCPSDKEEEKSTKDVSEKEDKDKSKEKVPRKMLSR
D
SSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAY
F
GMDHNVDQTGKAVIINKTSSTR
IPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQTGQNGYLNDI
R
LSKEAFSSSSHKRRQIFRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSF
S
GISILTRGDSIGSSKGGSAGRLSRP
GMALGAPEVCNQVTSPQSVRGLLPCTAQQQQQQQQQQQQLPALP
P
TPQHQPPLNNHMISQ
PVPALQPSPQPVQFSPSSCPQAEDLSNPFGQMSLSRQGSTEAADPSSALFQPPL
I
SQHPQQASFIMASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQ
IQVSYYPPGQYPNSNQQYRPLS
H
PVAYSPQRGQQLPQASQQP
GLQPMMSNQQQTAYQGMLGVQQPQNQGLLSNQRSSMGGQMQGLVVQYTPL
P
SYQ
VPVGSDSQNVVQPSFQQPMLVPASQSVQGGLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPPGSEQY
Q
MPQSPSPCSPPQMSQQYS
GVSPSGPGVVVMQLNVPNGPQAPQNPSMVQWSHCKYYSVEQRGQKPGDLYS
P
DGSPQ
ANAQMGSSPVTSPTQSPAPSPVTSLSNVCTGLSPLPVLTPFPRPGGPAQGDGRYSLLGQPLQYN
L
SICPPLLHGQSTYTVHQ
GQSGLKHGNRGKRQALKSASTDLGTADVVLGRVLEVTDLPEGITRTEADKLF
T
QLAMSGAKIQWLKDAQGLPGAGGGDNSGTAENGRHPDLAALYTIVAVFPSPLAAQNASLRLNNSVSRFK
L
RVAKKNYDLRILERASSQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser