NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24119.1 Public Mus musculus 10 Ikbip 23 108 98 CCDS HistoryNCBI Gene:67454Re-query CCDS DB by CCDS ID:24119.1Re-query CCDS DB by GeneID:67454See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020150.9 ENSMUSP00000020150.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020150.9Link to Ensembl Protein Viewer:ENSMUSP00000020150.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020150Re-query CCDS DB by Protein ID:ENSMUSP00000020150
Original member NCBI NM_027078.2 NP_081354.1 Updated not alive Link to Nucleotide Sequence:NM_027078.2Link to Protein Sequence:NP_081354.1Re-query CCDS DB by Nucleotide ID:NM_027078Re-query CCDS DB by Protein ID:NP_081354
Current member NCBI NM_027078.3 NP_081354.1 Accepted alive Link to Nucleotide Sequence:NM_027078.3Link to Protein Sequence:NP_081354.1Re-query CCDS DB by Nucleotide ID:NM_027078Re-query CCDS DB by Protein ID:NP_081354Link to BLAST:NP_081354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081354.1 345 Q9DBZ1-2 345 100% 0 0

Chromosomal Locations for CCDS 24119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 91083127 91083296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91093139 91093256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91101755 91102504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTCCGAAGTGAAGAGCCGAAAGAAGCCGGGGCCCAAAGTGGCTGCTCCTGAGCCCGAGAAGCGGAGTG
ATGGCAGGAAAAACCCCGAGGCGCGGGGGGACGCGGGCTGGGCGGACCCCCGCACTGGGCTCAGCCTGCT
GTCTCTGGCGATGACCCTGGGCCTGGCCTGGCTTGTATTTCAACAATCAGAAAAGTTTGCGAAGGTAGAA
AAACAATACCGGTTACTGCAAACAGAGAGCAGCGAGTTTCAGGGCCTCCAGAGTAAAATCAGTTTAATTT
CCAGCAAGTACCAGGAATGTGAAGCTCTCGTGGAACAACTGAAGGCTTTCCAAATAGCGGCTCATCTAAA
GCTCCTGCAGGAAGAAATTCATGAGATGAAAACATGGTCTAACAGGATAACTGAGAGACAGGGCACACTG
AATAACACACTAACAAGACTTTCTGAGGACATTATAAAAGTAGACCAAGGTACAGCATCCATGGCCAAAG
ACATGGGCCTCAAGATTACAAGCGTGAAAACAGACGTACGGCGGATTTCCGGTTTAGTAACTGAAGTCGA
ATCACTAACAGATGCCGTGCAAGCCCTGGGGAATAAAGTCAAAAAAGTAGAGACGGCTACGGTGGAAAAT
ATAGGTGATCTCCTCTCGAGCAGCATCGACCGAACATCGGCACTCCGAAAGACGGCAAGCGAAAATGCGA
AAAGAATTGACTCGGTCGCACAGAGGCTGGCTGAGCTCCAGGGCGATTTCGATGAGCACACAGATAGGTT
TTTAAGCTTGGAAAGTGACAGGGCGAAAGTTCTGAAGGCAGTGAGCTTTGCAAACGATCTGAAGCCAAAG
GTCTCTAATCTGAAGAAGGACTTCTCGCGTTTGGAACCACTGGTAGATGACCTAACACTTCGCATTGGGA
GACTAGGTTCTGACTTAATGCAAAGAGAGAAAGAAATTGCTTTCTTAAAGGAAAAGATATCTAATTTAAC
AGTAGTCCAAGCTGCGATTAAGGACATTAAAGATGAAATAACGCATATTTCAGATTAG

Translation (345 aa):
MSEVKSRKKPGPKVAAPEPEKRSDGRKNPEARGDAGWADPRTGLSLLSLAMTLGLAWLVFQQSEKFAKVE
KQYRLLQTESSEFQGLQSKISLISSKYQECEALVEQLKAFQIAAHLKLLQEEIHEMKTWSNRITERQGTL
NNTLTRLSEDIIKVDQGTASMAKDMGLKITSVKTDVRRISGLVTEVESLTDAVQALGNKVKKVETATVEN
IGDLLSSSIDRTSALRKTASENAKRIDSVAQRLAELQGDFDEHTDRFLSLESDRAKVLKAVSFANDLKPK
VSNLKKDFSRLEPLVDDLTLRIGRLGSDLMQREKEIAFLKEKISNLTVVQAAIKDIKDEITHISD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH