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Report for CCDS23993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23993.1 Public Mus musculus 10 Prtn3 23 108 98 CCDS HistoryNCBI Gene:19152Re-query CCDS DB by CCDS ID:23993.1Re-query CCDS DB by GeneID:19152See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006679.14 ENSMUSP00000006679.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006679.14Link to Ensembl Protein Viewer:ENSMUSP00000006679.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006679Re-query CCDS DB by Protein ID:ENSMUSP00000006679
Original member NCBI NM_011178.2 NP_035308.2 Updated not alive Link to Nucleotide Sequence:NM_011178.2Link to Protein Sequence:NP_035308.2Re-query CCDS DB by Nucleotide ID:NM_011178Re-query CCDS DB by Protein ID:NP_035308
Current member NCBI NM_011178.3 NP_035308.2 Accepted alive Link to Nucleotide Sequence:NM_011178.3Link to Protein Sequence:NP_035308.2Re-query CCDS DB by Nucleotide ID:NM_011178Re-query CCDS DB by Protein ID:NP_035308Link to BLAST:NP_035308.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035308.2 254 Q61096 254 99.6063% 0 1

Chromosomal Locations for CCDS 23993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79879676 79879742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79880428 79880593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79881036 79881177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79881935 79882165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79882818 79882976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGCTGGAAGCTACCCATCCCCCAAGGGGATCCATCCCTTCCTGCTGCTTGCCCTGGTGGTTGGTGGCG
CA
GTCCAGGCCTCCAAGATTGTAGGTGGGCACGAGGCTCGGCCCCACTCTCGGCCTTATGTGGCATCCCT
G
CAGCTGAGCAGGTTCCCTGGGAGCCACTTCTGTGGTGGCACCCTGATCCACCCGAGATTCGTGCTGACA
GCC
GCCCACTGCCTGCAGGACATCTCCTGGCAGCTTGTGACAGTGGTGCTGGGTGCCCACGACCTGCTGA
GC
TCGGAGCCTGAGCAGCAGAAGTTCACCATCAGTCAGGTCTTCCAGAACAATTACAACCCCGAGGAGAA
C
CTCAATGACGTGCTTCTCCTCCAGCTAAACCGGACAGCCTCCCTGGGCAAGGAGGTGGCGGTGGCTTCT
CTG
CCCCAGCAGGACCAGACTCTGTCCCAGGGCACCCAGTGCCTGGCCATGGGCTGGGGTCGCCTGGGCA
CC
CAAGCACCCACGCCCCGTGTGCTGCAGGAACTGAACGTCACGGTGGTCACCTTCCTATGCCGGGAACA
C
AACGTGTGCACGCTGGTGCCACGGAGGGCAGCAGGCATATGCTTCGGAGACTCGGGCGGCCCCTTGATC
TGC
AATGGCATTCTTCATGGAGTGGACTCCTTCGTGATCCGCGAATGCGCCTCCCTCCAGTTCCCTGATT
TC
TTCGCCCGGGTGTCCATGTATGTGGACTGGATTCAAAACGTGCTGCGGGGCGCAGAGCCCTGA


Translation (254 aa):
MAGSYPSPKGIHPFLLLALVVGGAVQASKIVGGHEARPHSRPYVASLQLSRFPGSHFCGGTLIHPRFVLT
A
AHCLQD
ISWQLVTVVLGAHDLLSSEPEQQKFTISQVFQNNYNPEENLNDVLLLQLNRTASLGKEVAVAS
L
PQQDQTLSQGTQCLAMGWGRLGTQAPTPRVLQELNVTVVTFLCREHNVCTLVPRRAAGICF
GDSGGPLI
C
NGILHGVDSFVIRECASLQFPDFFARVSMYVDWIQNVLRGAEP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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