NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23458.1 Public Mus musculus 9 Acad11 23 108 98 CCDS HistoryNCBI Gene:102632Re-query CCDS DB by CCDS ID:23458.1Re-query CCDS DB by GeneID:102632See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047799.12 ENSMUSP00000043424.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047799.12Link to Ensembl Protein Viewer:ENSMUSP00000043424.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047799Re-query CCDS DB by Protein ID:ENSMUSP00000043424
Original member Current member NCBI NM_175324.4 NP_780533.2 Accepted alive Link to Nucleotide Sequence:NM_175324.4Link to Protein Sequence:NP_780533.2Re-query CCDS DB by Nucleotide ID:NM_175324Re-query CCDS DB by Protein ID:NP_780533Link to BLAST:NP_780533.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780533.2 779 Q80XL6 779 99.8716% 0 1

Chromosomal Locations for CCDS 23458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104063761 104063903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104073622 104073721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104075817 104075942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104076330 104076491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104078563 104078727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104081231 104081372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104081698 104081819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104082791 104082897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104084161 104084287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104090258 104090335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104091592 104091730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104095521 104095628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104097354 104097452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104113462 104113528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104114453 104114538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104115278 104115349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104116165 104116319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104123047 104123163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104124018 104124127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104126582 104126696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGAGACGGATGTCACCAGTGACACCGTGGAAGTGCTACCCCAGCACAAGTTCGACCTCAGGTCCCTGG
AGGCCTACCTGAATCAGCACTTGCCGGGCTTTGGGTCAGATTCCCGGGCTGTGCTGACTGTTACTCAATA
CAGATCAGGACAGTCAAACCCAACCTTCTTTCTCCAGAAAGGATCTCAAGCCTATGTTCTCAGGAAGAAA
CCACCCGGCTCTCTTCTTCCCAAAGCACATAAGATTGACAGAGAATTCAAGATCCAGAAAGCCTTGTTTT
CCATTGGATTTCCTGTTGCCAAGCCCCTGCTATACTGCAGAGATGCTTCAGTTATCGGAACGGAATTTTA
TGTAATGGAACATGTGCAGGGTCGGATCTTTCGTGATTTTTCCATTCCTGGAGTTAGCTCAGCAGAACGT
GCTGCTATATATGTGTCTGTGGCAGAAACCCTGGCATGGCTACATTCTCTGGATATACGCTCGCTGAAGC
TGGACAAATACGGTACTGGAGTCGGGTACTGCAAAAGGCAGGTGTCCACCTGGACGAAGCAGTACCAGGC
CTCAGCCCATCAGAGCATCCCTGCCATGGACCAGCTCTCCACGTGGCTGATGAAGAACTTGCCAGATAGT
GACAGTGAGGAGTGCCTGGTCCACGGAGACTTCAAGCTGGACAACATAGTTTTCCACCCCAAAGAGTGTC
GGGTTATAGCAGTGTTGGACTGGGAGCTCTCGACCTTCGGCCATCCCTTGACGGACTTAGCCCATCTTTC
CTTGTTTTACTATTGGCCCAGGACACTGCCCATGATAAACCGAGGCTCTCACATTCCAGAGAACACAGGA
ATACCGTTGATGGAAGAACTGATTTCAATATACTGCCACCGAAGGGGAATTGATCCTAATCTCCCTAACT
GGAATTTCTTTATGGCCCTCTCATTTTTTAAATTGGCTGGAATATCACAGGGAGTCTATCGTAGATACCT
CATGGGAAATAACTCATCTGAGGATAGCTTCTTAACTGCCAATACTGTGCAACCTCTGGCAGAAACTGGA
TTGCAGCTGTCAAAAAGAACTCTCAGGACTACACCACCACAGGCTGATGCTAAAAGCCAGCTGTTTGCAC
AGAGCAGGAGAGGCCAGGAAGTTCTCACTAGAGTGAAGCAGTTCATGAAGCAGCATGTCTTTCCTGCTGA
GAAGGAAGTAGCTGAATACTATGCTCAAAGTGGAAACTCAGCGGAAAAGTGGGGACACCCCTTAGTGATC
GAAAAACTAAAGGAAATAGCCAAAGCAGAGGGCCTGTGGAATTTGTTCTTGCCAGCTGTGAGCGGTCTCA
GCCAGGTGGACTATGCCTTGATTGCTGAAGAGACAGGAAAATGCTTTTTTGCTCCAGATGTTTTTAACTG
CCAAGCACCAGACACAGGCAACATGGAGGTACTGCACCTGTATGGCAGCGAGCAGCAGAAGAAGCAGTGG
CTGGAGCCTCTCCTGCGTGGCGATATCACCTCCGTCTTCTGTATGACAGAGCCCAACGTCTCATCAAGCG
ATGCCACGAACATCGAATGCACCATCCAGAGAGATGGAGGTGGCTATATAGTTAACGGCAAGAAGTGGTG
GAGCAGCGGAGCTGGGAATCCCAAGTGCAAAATCGCCATTGTTTTGGGAAGAACGGAGTCTCCCTCTGCA
TCCAGACACAGACAGCACAGCATGATCCTCGTGCCGATGGACACACCTGGAGTGGAGTTAATAAGGCCTT
TGTCGGTGTTCGGCTACATGGATAATATGCATGGCGGGCACTGGGAGGTCCATTTCAATCACGTGCGCGT
TCCTGCCAGCAACTTAATACTAGGTGAAGGCAGGGGCTTTGAAATTTCCCAAGGCCGCCTTGGACCTGGA
AGAATCCACCACTGTATGAGAACCGTGGGTTTGGCAGAACGCATTCTGCAGATCATGTGTGACCGGGCCG
TGCAGAGGGAGGCCTTCAAGAAGAAGCTCTACGAACATGAAGTCGTGGCTCACTGGATTGCTAAGAGCCG
TATAGCCATCGAGGAGATCCGCTTGCTGACCTTGAAAGCGGCTCACAGCATAGATACTCTGGGCAGTGCC
TCAGCCAGGAAGGAGATTGCAATGATCAAAGTGGCTGCCCCCAAAGCTGTCTGCAAAATAGCTGACTGGG
CCATCCAGGTGCACGGAGGCGCGGGAGTTTCCCAGGATTACCCTCTGGCTAACATGTACGCCATCATACG
CACCCTGCGCTTGGCAGACGGCCCTGACGAAGTCCACCTCTCAGCGATCGCCAAGATGGAGCTTCAGGAC
CAAGCCAGACGGTTGACAGCCAGGATGTGA

Translation (779 aa):
METDVTSDTVEVLPQHKFDLRSLEAYLNQHLPGFGSDSRAVLTVTQYRSGQSNPTFFLQKGSQAYVLRKK
PPGSLLPKAHKIDREFKIQKALFSIGFPVAKPLLYCRDASVIGTEFYVMEHVQGRIFRDFSIPGVSSAER
AAIYVSVAETLAWLHSLDIRSLKLDKYGTGVGYCKRQVSTWTKQYQASAHQSIPAMDQLSTWLMKNLPDS
DSEECLVHGDFKLDNIVFHPKECRVIAVLDWELSTFGHPLTDLAHLSLFYYWPRTLPMINRGSHIPENTG
IPLMEELISIYCHRRGIDPNLPNWNFFMALSFFKLAGISQGVYRRYLMGNNSSEDSFLTANTVQPLAETG
LQLSKRTLRTTPPQADAKSQLFAQSRRGQEVLTRVKQFMKQHVFPAEKEVAEYYAQSGNSAEKWGHPLVI
EKLKEIAKAEGLWNLFLPAVSGLSQVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEQQKKQW
LEPLLRGDITSVFCMTEPNVSSSDATNIECTIQRDGGGYIVNGKKWWSSGAGNPKCKIAIVLGRTESPSA
SRHRQHSMILVPMDTPGVELIRPLSVFGYMDNMHGGHWEVHFNHVRVPASNLILGEGRGFEISQGRLGPG
RIHHCMRTVGLAERILQIMCDRAVQREAFKKKLYEHEVVAHWIAKSRIAIEEIRLLTLKAAHSIDTLGSA
SARKEIAMIKVAAPKAVCKIADWAIQVHGGAGVSQDYPLANMYAIIRTLRLADGPDEVHLSAIAKMELQD
QARRLTARM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH